View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_105 (Length: 322)

Name: NF1773_low_105
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_105
NF1773_low_105
[»] chr8 (4 HSPs)
chr8 (19-73)||(16037945-16037999)
chr8 (244-305)||(21488589-21488650)
chr8 (21-69)||(37512867-37512915)
chr8 (145-182)||(21488649-21488686)
[»] chr5 (2 HSPs)
chr5 (19-72)||(7440193-7440246)
chr5 (19-73)||(41393444-41393496)
[»] chr2 (1 HSPs)
chr2 (17-73)||(6364235-6364291)
[»] chr3 (2 HSPs)
chr3 (148-301)||(8374876-8375030)
chr3 (27-69)||(39692157-39692199)
[»] chr4 (2 HSPs)
chr4 (149-305)||(17859981-17860138)
chr4 (17-65)||(55591059-55591107)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 16037999 - 16037945
Alignment:
Q  19 cagatttgtctctcttatctctttcatgtgtgtgccaaacaagagaaaatgctag 73  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16037999 cagatttgtctctcttctctctttcatgtgtgtgccaaacaagagaaaatgctag 16037945  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 21488650 - 21488589
Alignment:
Q  244 aataccaacttccgaagctataacacaatattagatgcttaaatggatttgagagaacaaca 305  Q
    |||||||| ||| || ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  21488650 aataccaatttcggatgctataacacaatattagacgctcaaatggatttgagagaacaaca 21488589  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 37512915 - 37512867
Alignment:
Q  21 gatttgtctctcttatctctttcatgtgtgtgccaaacaagagaaaatg 69  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  37512915 gatttgtctctcttctctctttcatgtgtgtaccaaacaagagaaaatg 37512867  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 21488686 - 21488649
Alignment:
Q  145 atcatatttttcatatccatcacttcatggatggtaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21488686 atcatatttttcatatccatcacttcatggatggtaaa 21488649  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 7440246 - 7440193
Alignment:
Q  19 cagatttgtctctcttatctctttcatgtgtgtgccaaacaagagaaaatgcta 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7440246 cagatttgtctctcttctctctttcatgtgtgtgccaaacaagagaaaatgcta 7440193  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41393444 - 41393496
Alignment:
Q  19 cagatttgtctctcttatctctttcatgtgtgtgccaaacaagagaaaatgctag 73  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  41393444 cagatttgtctctcct--ctctttcatgtgtgtgccaaacaagagaaaatgctag 41393496  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 6364291 - 6364235
Alignment:
Q  17 cacagatttgtctctcttatctctttcatgtgtgtgccaaacaagagaaaatgctag 73  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  6364291 cacaaatttgtctctcttctttctttcatgtgtgtgccaaacaagagaaaatgctag 6364235  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 301
Target Start/End: Complemental strand, 8375030 - 8374876
Alignment:
Q  148 atatttttcatatccatcacttcatggatggtaaagagcccttccaacaaatactaattt-ctcacacttagaactctctgattcataattatctctaat 246  Q
    |||||||||| ||||||||||| ||| ||| ||| ||   ||| |||||||||| ||||| |||| |||  || |||| || |||| | |||||||||||    
T  8375030 atatttttcacatccatcactttatgaatgataatgaaaacttacaacaaataccaattttctcagactccgagctctttgcttcaaagttatctctaat 8374931  T
Q  247 accaacttccgaagctataacacaatattagatgcttaaatggatttgagagaac 301  Q
    ||||||||| ||  ||||||||| |||| | ||||||| || |||||||||||||    
T  8374930 accaacttcggatactataacacgatatcatatgcttacatagatttgagagaac 8374876  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 39692199 - 39692157
Alignment:
Q  27 tctctcttatctctttcatgtgtgtgccaaacaagagaaaatg 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  39692199 tctctcttctctctttcatgtgtgtgccaaacaagagaaaatg 39692157  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 17860138 - 17859981
Alignment:
Q  149 tatttttcatatccatcacttcatggatggtaaagagcccttccaacaaatactaa-tttctcacacttagaactctctgattcataattatctctaata 247  Q
    |||||||||||||||||||||| | ||||||||||| | ||  |||||||||| || ||||||| ||| | | ||||    | |||||| ||||||||||    
T  17860138 tatttttcatatccatcacttcttagatggtaaagaacactcgcaacaaataccaactttctcaaactcaaagctcttccgtccataataatctctaata 17860039  T
Q  248 ccaacttccgaagctataacacaatattagatgcttaaatggatttgagagaacaaca 305  Q
     ||||||| ||   ||||||| | |||||||||||||     ||||||||||||||||    
T  17860038 tcaacttcggatcttataacaaattattagatgcttacgcatatttgagagaacaaca 17859981  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 55591059 - 55591107
Alignment:
Q  17 cacagatttgtctctcttatctctttcatgtgtgtgccaaacaagagaa 65  Q
    |||| ||||||||||||| |||||||| ||  |||||||||||||||||    
T  55591059 cacacatttgtctctcttctctctttcttgcatgtgccaaacaagagaa 55591107  T

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