View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_107 (Length: 320)
Name: NF1773_low_107
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 66 - 313
Target Start/End: Original strand, 35112245 - 35112491
Alignment:
| Q |
66 |
gataccacaaaaatctaataatcgaaatcttaatcggaaaaagaagaggaatagaagaataccttgattatgtgcgttagtgttttctttttcttttctc |
165 |
Q |
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| T |
35112245 |
gataccacgataaactaattatcgaaatcttaatcgaaaaaagaagaggaatagaagattaccttgattatgtgcgtaagggttttctttttcttttctc |
35112344 |
T |
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| Q |
166 |
ttcaacgaaacgaaagctacaatttgtgtaattgtgattatattaggctagggg-ttttcgcgttttatagtgaaaaattatttgagattgcgtttggtt |
264 |
Q |
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| T |
35112345 |
ttcaacgaaacgaaagctacaatttgtgtaattgtgat--tattaggctaggggtttttcgtgttttatagtgaaaaattatttgagattacgtttagta |
35112442 |
T |
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| Q |
265 |
aatgcaagctctaccaattatattgtcacacgtggactgatattcttgg |
313 |
Q |
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| T |
35112443 |
aatgcaagctctaccaattatattgtcacacgtggactgatatttttgg |
35112491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 35112220 - 35112264
Alignment:
| Q |
19 |
agtaatattgcgttaagtcaattatgataccacgataaactaatt |
63 |
Q |
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| T |
35112220 |
agtaatattgcgttaagtcaattatgataccacgataaactaatt |
35112264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 47988816 - 47988645
Alignment:
| Q |
36 |
tcaattatgataccacgataaactaattgagataccacaaaaatctaataatcgaaatcttaatcggaaaaagaagaggaatagaagaata-----cctt |
130 |
Q |
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| T |
47988816 |
tcaattatgatccaacgataaactaattgagagaacacaaaaccctaataatcgaaatcttaatcagaaagagaagaggaatagaagaatagaatacctt |
47988717 |
T |
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| Q |
131 |
gattatgtgcgttagtgttttctttttcttttctcttcaacgaaacgaaagctacaatttgtgtaattgtga |
202 |
Q |
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| T |
47988716 |
gattctgtgcgttagggttttctttttcttttctctacaacgaaacgaaagctacaatatgtgaaattgtga |
47988645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 47988187 - 47988077
Alignment:
| Q |
202 |
attatattaggctaggggttttcgcgttttatagtgaaaaattatttgagattgcgtttggttaatgcaagctctaccaattatattgtcacacgtggac |
301 |
Q |
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| T |
47988187 |
attatattgggttaggggttttcga-ttttatagtgaaaaattatttgagatcgcgtcatgtcaactcaagatcatccaattatatcgtgacacgtggac |
47988089 |
T |
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| Q |
302 |
tgatattcttgg |
313 |
Q |
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||||||| |||| |
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| T |
47988088 |
tgatatttttgg |
47988077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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