View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_108 (Length: 317)
Name: NF1773_low_108
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_108 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 29765709 - 29765979
Alignment:
| Q |
17 |
ccttttaagggaatttgtattgcaaatgtgacactagggatggctgttaaggccaagaaaaggtcatggacatgcactgatattgaagggatgactagtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29765709 |
ccttttaagggaatttgtattgcaaatgtgacactagggatggctgttaaggccaagaaaaggtcatggacatgcactgatattgaagggatgactagtg |
29765808 |
T |
|
| Q |
117 |
gtgtgacacctccgccttgtgatctgttgcctgatcaagggcctgagaaaatcggggcgtgtgatttcccagcagagagtttacctattgataatttgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29765809 |
gtgtgacacctccgccttgtgatctgttgcctgatcaagggcctgagaaaatcggggcgtgtgatttcccagcagagagtttacctattgataatttgga |
29765908 |
T |
|
| Q |
217 |
gcttaagaagtgtagttacagcatgaaatatgtaatgtagttactgttgaggaatgatctgtatcaaacag |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29765909 |
gcttaagaagtgtagttacagcatgaaatatgtaatgtagttactgttgaggaatgatctgtatcaaacag |
29765979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 11061562 - 11061378
Alignment:
| Q |
56 |
atggctgttaaggccaagaaaaggtcatggacatgcactgatattgaagggatgactagtggtgtgacacctccgccttgtgatctgttgcctgatcaag |
155 |
Q |
| |
|
||||||| |||||| |||||| | |||||||||| | ||||||||||||||| || ||||| || || ||| |||||||||| |||| ||||| |||| |
|
|
| T |
11061562 |
atggctgctaaggctaagaaacagccatggacatgtaatgatattgaagggatcacaagtggagttactcctaagccttgtgatttgttacctgagcaag |
11061463 |
T |
|
| Q |
156 |
ggcctgagaaaatcggggcgtgtgatttcccagcagagagtttacctattgataatttggagcttaagaagtgtagttacagcat |
240 |
Q |
| |
|
|| ||||| ||| | | |||||||| || |||| | |||||||||||| |||||||| ||| |||||| ||||||||| |
|
|
| T |
11061462 |
ggaaagagaatatcagagattgtgattttccctcagattatctacctattgatatgttggagctgaagcagtgtacttacagcat |
11061378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University