View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_109 (Length: 316)
Name: NF1773_low_109
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_109 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 9998741 - 9998904
Alignment:
| Q |
18 |
ctaactttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtaaagtttgttatgggcctatttgaaa |
117 |
Q |
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| T |
9998741 |
ctaaccttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtcaagtttgttatgggcctatttgaaa |
9998840 |
T |
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| Q |
118 |
atccattggctgattacagccttgccgatcagctcgggagccaggttagtcgatcagctcagag |
181 |
Q |
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| T |
9998841 |
atccattggctgattacagccttgccgatcagctcgggagccaggttagtcgatcagctcagag |
9998904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 10004437 - 10004590
Alignment:
| Q |
18 |
ctaactttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtaaagtttgttatgggcctatttgaaa |
117 |
Q |
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| T |
10004437 |
ctaaccttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtgaagtttgttatgggcctatttgaaa |
10004536 |
T |
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| Q |
118 |
atccattggctgattacagccttgccgatcagctcgggagccaggttagtcgat |
171 |
Q |
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| T |
10004537 |
atccattggctgattacagccttgccgatcaaatcggtagcccggttagtcgat |
10004590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 10012979 - 10013145
Alignment:
| Q |
17 |
actaactttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtaaagtttgttatgggcctatttgaa |
116 |
Q |
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| T |
10012979 |
actaacctcactagtgaaaaagaatgccataccaatgagtagaattgatgatgcagtaaagagaattttgagagtcaagtttgttatgggcctatttgaa |
10013078 |
T |
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| Q |
117 |
aatccattggctgattacagccttgccgatcagctcgggagccaggttagtcgatcagctcagagtt |
183 |
Q |
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| T |
10013079 |
aatccattagctgattacagccttgccgatcaaatcgggagcccggttagtcgatcaactcagagtt |
10013145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 9991589 - 9991744
Alignment:
| Q |
21 |
actttactagtgaaaaagaatgtcatacctatgagtagaattgatgatgcagtgaagagaattttgagagtaaagtttgttatgggcctatttgaaaatc |
120 |
Q |
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| T |
9991589 |
actttactagtgaaaagcaatgccatacctatgagtagaattgatgatgcagtgaagagaattttgagagtcaagtttgttatgggactatttgaaaatc |
9991688 |
T |
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| Q |
121 |
cattggctgattacagccttgccgatcagctcgggagccaggttagtcgatcagct |
176 |
Q |
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| T |
9991689 |
cattggcagattacagccttaccgatcaactcgggagccaggttagtcgatgagct |
9991744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 9998906 - 9998951
Alignment:
| Q |
257 |
ttacactgtcaatcaatagtaatcgtaagatcgttcaaaatgtttg |
302 |
Q |
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| T |
9998906 |
ttacactgtcaatcaatagtaatcgtaagatcgtttaaaatgtttg |
9998951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 33433750 - 33433808
Alignment:
| Q |
222 |
gattttatttgtatacactgtaagtgtaaagatttttacactgtcaatcaatagtaatc |
280 |
Q |
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| T |
33433750 |
gatttcatttttatacactctcaatgtaaagatttttacactctcaatcaatcgtaatc |
33433808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 10386942 - 10386999
Alignment:
| Q |
216 |
aatttggattttatttgtatacactgtaagtgtaaagatttttacactgtcaatcaat |
273 |
Q |
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| T |
10386942 |
aatttggatttgatttatatatacttttagtgtaaagaattttacaatgtcaatcaat |
10386999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 16230865 - 16230809
Alignment:
| Q |
247 |
gtaaagatttttacactgtcaatcaatagtaatcgtaagatcgttcaaaatgtttga |
303 |
Q |
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| T |
16230865 |
gtaaagatttttacactgtcaatcgatcgtaatcgactgatcatttaaaatgtttga |
16230809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 36501906 - 36501946
Alignment:
| Q |
233 |
tatacactgtaagtgtaaagatttttacactgtcaatcaat |
273 |
Q |
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| T |
36501906 |
tatacactgtcagtgtaaatatttttacactgtcaaccaat |
36501946 |
T |
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