View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_11 (Length: 691)

Name: NF1773_low_11
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_11
NF1773_low_11
[»] chr8 (1 HSPs)
chr8 (16-673)||(31241991-31242649)
[»] scaffold0094 (7 HSPs)
scaffold0094 (293-673)||(10781-11174)
scaffold0094 (556-673)||(8785-8908)
scaffold0094 (293-472)||(8913-9099)
scaffold0094 (160-248)||(10694-10782)
scaffold0094 (9-134)||(10531-10652)
scaffold0094 (9-135)||(9227-9349)
scaffold0094 (160-248)||(9098-9186)
[»] chr7 (7 HSPs)
chr7 (293-663)||(17216101-17216483)
chr7 (402-673)||(17214081-17214358)
chr7 (160-248)||(17216014-17216102)
chr7 (9-135)||(17214528-17214650)
chr7 (160-248)||(17214399-17214487)
chr7 (9-135)||(17215851-17215973)
chr7 (293-326)||(17214367-17214400)


Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 31242649 - 31241991
Alignment:
Q  16 atggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31242649 atggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcacaacctgagacattgcaggtacgtaggaggat 31242550  T
Q  116 ttaaatgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242549 ttaaatgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctg 31242450  T
Q  216 atgtttgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242449 atgtttgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcat 31242350  T
Q  316 agcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatg-nnnnnnnnggtatttcaattaatattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||||||||||    
T  31242349 agcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgcctaagatatgtttttttttggtatttcaattaatattc 31242250  T
Q  415 tcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242249 tcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaatta 31242150  T
Q  515 tgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242149 tgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcat 31242050  T
Q  615 ctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242049 ctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 31241991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 293 - 673
Target Start/End: Original strand, 10781 - 11174
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||| |||  ||| |         
T  10781 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatgcctataataagttatt 10880  T
Q  393 nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctt 483  Q
       || |||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10881 t--ggaatttctatgttatcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatctt 10978  T
Q  484 aatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta 583  Q
    ||||||||  ||||||   ||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10979 aatcagcaaaaatcaacgtagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaacttta 11078  T
Q  584 attatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    ||| ||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||  ||||||||    
T  11079 attctctcgtgttcttaatctttacttaagaatgcatctttgttctcaatcatagtgtctaacacgcccattgcaagtaatcttacatcttgatgc 11174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 556 - 673
Target Start/End: Complemental strand, 8908 - 8785
Alignment:
Q  556 ccaatccttgatagaatcatgaactttaattatctcgtgttcttaatctta------gaatgcatctttgttctcgatcatagtgtctaacacacccatt 649  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||    
T  8908 ccaatccttgatagaatcgtgaactttaattatcttgtgttcttaatctttacttaggaatgcatctttgttctcgatcatagtgtctaacacgcccatt 8809  T
Q  650 gcaactaatcttacgccttgatgc 673  Q
    ||||||||||||||  ||||||||    
T  8808 gcaactaatcttacatcttgatgc 8785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 9099 - 8913
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||  | ||||||||| |||  ||| |         
T  9099 atctaactaaacaagcatatcatagcagaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgcctataataagttatt 9000  T
Q  393 nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc 472  Q
        | |||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  8999 ta--gaatttctatgttgttaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc 8913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 10694 - 10782
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10694 attaataagtatgtggcatgatgctcagaatattaggtttttaaatgttgttgctgatgtttgtatgtaatttctttgagataaattat 10782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 10531 - 10652
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||| |||||||||||||||||| |||  ||||||| | ||| |||| ||||| ||| |||||| ||||       
T  10531 gaagaaaatggcaaggctgatttaagttttcttagagaagagattcaaaattcaggattcctttgtttgtcttcacaaccttagatattgcaagtac--- 10627  T
Q  109 ggaggatttaaatgaatgttctatct 134  Q
      ||||||||||||||||||||||||    
T  10628 -aaggatttaaatgaatgttctatct 10652  T

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Target: scaffold0094; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 9349 - 9227
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||  ||||||| | | | |||| | ||| |||||||||||||||       
T  9349 gaagaaaatggcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttgtttcttttcacagcctaagacattgcaggtac--- 9253  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
      || |||||||| |||||||||||||    
T  9252 -aagtatttaaattaatgttctatctc 9227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 9186 - 9098
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||||| ||||| |||||||| |  | |||||||||||| |||||||||| |||||||||    
T  9186 attaataagtatgtggcatgatgctcacaatatcaggtttttaaatgttgttcatcatgtttgtatgttatttctttgatataaattat 9098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 293 - 663
Target Start/End: Original strand, 17216101 - 17216483
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||| ||||||| |||| |         
T  17216101 atctaactaaacaaggacatcgtagcagaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgataagttatt 17216200  T
Q  393 nnnggtattt-------caattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaa 485  Q
         | |||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||| ||||||    
T  17216201 tggaatttttatgttgtcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtcttaa 17216298  T
Q  486 tcagcaggaatcaatacagtgagtaattatgcaatccttttcttt-ccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaa 584  Q
    ||||||  ||||||| |||| ||||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  17216299 tcagcaaaaatcaatgcagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaactttag 17216398  T
Q  585 ttatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac 663  Q
    |||||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17216399 ttatctcgtgctcttaatctttacttaagaatgcatctttgttctcgatcatagtgtctaacacgcccattgcaactaatcttac 17216483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 402 - 673
Target Start/End: Complemental strand, 17214358 - 17214081
Alignment:
Q  402 tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata 501  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||      
T  17214358 tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg 17214259  T
Q  502 cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaa 601  Q
    |||| ||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  17214258 cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaactttaattatctcgtgttcttaa 17214159  T
Q  602 tctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    ||||      |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  ||||||||    
T  17214158 tctttacttaagaatgcatctttgttctcgataatattgtctaacacgcccattgcaactaatcttacatcttgatgc 17214081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 17216014 - 17216102
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  17216014 attaataagtatgtggcatgatgctcaaaatatcaggtttttaaatgttgctgctgatgtttgtatttaatttctttgagataaattat 17216102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 17214650 - 17214528
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||| |||||||||||| |||||||||||||||||||||||||  ||||||| | ||| |||| ||||||||||||||||||||        
T  17214650 gaagaaaatggcaaggatgatttaagtttactcagagaagagattcaaaatccaggattcctttgtttgtcttcacaacctgagacattgcaggta---- 17214555  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
    | | |||||||||||||||||||||||    
T  17214554 gaatgatttaaatgaatgttctatctc 17214528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 17214487 - 17214399
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||||||||| | ||||| |||||||||| | |||||||||||||||||||||| |||||||||||    
T  17214487 attaataagtatgtggcatgatgctcataatataaggtttttaaatgttgcttcagatgtttgtatgtaatttctttaagataaattat 17214399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 17215851 - 17215973
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||  ||||||| | | | |||| ||||||||||||| |    | |||    
T  17215851 gaagaaaatggcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttatttatcttcacaacctgagacattac----atgta 17215946  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
    | |||| ||||||||||||||||||||    
T  17215947 gaaggacttaaatgaatgttctatctc 17215973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 17214400 - 17214367
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattt 326  Q
    ||||||||||||||||||||||||||||||||||    
T  17214400 atctaactaaacaaggacatcatagcagaaattt 17214367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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