View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_114 (Length: 308)
Name: NF1773_low_114
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 13792557 - 13792838
Alignment:
| Q |
16 |
ccttcttctaataccaattggatccataactttcaaaacaggaaaacaatctgcaatattagctcttccaacttccttcataatatttgtaactaattcc |
115 |
Q |
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| T |
13792557 |
ccttcttctaataccaattggatccaaaactttcaaaacaggaaaacaatctgcaatattagctcttccaacttccttcataatatttgtaactaattcc |
13792656 |
T |
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| Q |
116 |
ttaaactctccagctatatcactcgaacgaaccaaatcaactgaataaaccgtattcgacaacatattaattgttgttttaaaagcaagtcttccaatat |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13792657 |
ttaaactctccagctatatcgctcgaacgaaccaaatcaactgaataaaccgtattcgacaacatattaatcgttgttttaaaagcaagtcttccaatat |
13792756 |
T |
|
| Q |
216 |
taactgcttcaaacttctccgcgcttttgtttatatcgtttgaaagttcgagaatcttcttctttcttagcgtgtgattcat |
297 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13792757 |
taactacttcaaacttctccgcgctattgtttatatcgtttgaaagttcgagaatcttcttctttcttagcgtgtgattcat |
13792838 |
T |
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