View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_115 (Length: 305)
Name: NF1773_low_115
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_115 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 8697770 - 8698056
Alignment:
| Q |
19 |
gataagcccaataagctaatccaaacagaccttaattactaccataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattca |
118 |
Q |
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| T |
8697770 |
gataagcccaataagctaatccaaacagaccttaattactaccataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattca |
8697869 |
T |
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| Q |
119 |
taccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggagcaattcctaacaccaattttagattgattagaatcatccga |
218 |
Q |
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| T |
8697870 |
taccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggagcaattcctaacaccaattttagattgattagaatcatctga |
8697969 |
T |
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| Q |
219 |
ttccatagtgttaactccatcaaaagagccataaaaaccattaccagaaccatttgaaaagccttggtaagtcaactcagatccacc |
305 |
Q |
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| T |
8697970 |
ttccatagtgttaactccaccaaaagagccataaaaaccattaccagaaccatttgaaaagccttggtaaatcaactcagatccacc |
8698056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 9049657 - 9049943
Alignment:
| Q |
19 |
gataagcccaataagctaatccaaacagaccttaattactaccataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9049657 |
gataagcccaataagctaatccaaacagaccttaattactaccataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattca |
9049756 |
T |
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| Q |
119 |
taccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggagcaattcctaacaccaattttagattgattagaatcatccga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9049757 |
taccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggagcaattcctaacaccaattttagattgattagaatcatctga |
9049856 |
T |
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| Q |
219 |
ttccatagtgttaactccatcaaaagagccataaaaaccattaccagaaccatttgaaaagccttggtaagtcaactcagatccacc |
305 |
Q |
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| T |
9049857 |
ttccatagtgttaactccaccaaaagagccataaaaaccattaccagaaccatttgaaaagccttggtaaatcaactcagatccacc |
9049943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 13411339 - 13411388
Alignment:
| Q |
133 |
gagaaaaattcagcaggtgaactcttttgcctaataagattggagcaatt |
182 |
Q |
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| T |
13411339 |
gagaaaaactcagcaggagaactcttttgcctaataagattggagcaatt |
13411388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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