View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_116 (Length: 304)
Name: NF1773_low_116
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 6638425 - 6638145
Alignment:
| Q |
17 |
acttaggattcccaaacccgcaaagtcaagatgaaattccttctacccatatttttcaagcaagcgcagaagtactcgcgctggcatctaccacctttaa |
116 |
Q |
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| T |
6638425 |
acttaggattcccaaacccgcaaagtcaagatgaaattccttctacccatatttttcaagcaagcgcggaaatactcgcgctggcatctaccacctttaa |
6638326 |
T |
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| Q |
117 |
ccaaggagtccttaatctttgaaacaactaactatgcttgaactttaataaggcccataaataagaacatgagttaatcctacaactcactttctataaa |
216 |
Q |
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| T |
6638325 |
caaacgagtccttaatctttgaaacaactaactatgcttgaactttaataaggcccataaataagaacatgagttaatcctacaactcactttctataaa |
6638226 |
T |
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| Q |
217 |
gtaaggatcccatctctaacctttaaatttaagatcttaatatgctcaatcaattgcgaacattccttcattttcatctca |
297 |
Q |
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| T |
6638225 |
gtaaggatcccatctctaacctttaaatttaagatcttaatatgctcaatcaattgtgaacattccttcattttcatctca |
6638145 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 30226115 - 30226067
Alignment:
| Q |
33 |
cccgcaaagtcaagatgaaattccttctacccatatttttcaagcaagc |
81 |
Q |
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||||||||| |||||| |||||||||||||| | |||||||||||||| |
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| T |
30226115 |
cccgcaaagccaagatagaattccttctacccctgtttttcaagcaagc |
30226067 |
T |
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