View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_118 (Length: 302)
Name: NF1773_low_118
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 27 - 287
Target Start/End: Complemental strand, 35479314 - 35479050
Alignment:
| Q |
27 |
ataatataaagtggaagacattgttttggttttagctattttttgggtgacatggtttcatccaccagtactgcaaannnnnnnnnnnngaagtaagacg |
126 |
Q |
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| T |
35479314 |
ataatataaagtggaagacattgttttggttttagctattttttgggtgacatggtttcatccaccagtactgcaaattttttatttttgaagtaagacg |
35479215 |
T |
|
| Q |
127 |
tgtgcacgcaatgcagcattatctgctcgtacaattcatataaattatagttttgctgtcatgtggtagctatcaaatgcttgtttaatggatggtatga |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35479214 |
tgtgcacgcaatgcagcattatctgctcgtacaattcatataaattatagttttgctgtcatgtggtagctatcaaatgcttgttcaatggatggtatga |
35479115 |
T |
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| Q |
227 |
ggttgttatctttgatgttcggtttgc----ttagctttcttcgatgtggtgctttgtttatctt |
287 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35479114 |
ggttgttatctttgatgttcggtttgcttaattagctttcttcgatgtggtgctttgtttatctt |
35479050 |
T |
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