View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_120 (Length: 297)
Name: NF1773_low_120
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 35941010 - 35941272
Alignment:
| Q |
12 |
gaacataaaaactataaaagacatacataagaacaacagctatgaggataagaagtttatgagactatttttacctccattgagccataatactaaaggt |
111 |
Q |
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| T |
35941010 |
gaacataaaaactataaaagacatacataagaacaacagctatgaggataagaagtttatgagactatttttacctccattgagccataatactaaaggt |
35941109 |
T |
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| Q |
112 |
ttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattgatcaaaattca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35941110 |
ttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattggtcaaaattca |
35941209 |
T |
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| Q |
212 |
ctccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtg |
274 |
Q |
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||||||| |||||||||||||||||| | |||||||||||| | ||||| |||||||||||| |
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| T |
35941210 |
ctccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtg |
35941272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 35911555 - 35911757
Alignment:
| Q |
78 |
atttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatca |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
35911555 |
atttttacctccattgagccataatactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctctaccagcctcaggatca |
35911654 |
T |
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| Q |
178 |
actgtgacatagcctgaatattgatcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtgcta |
277 |
Q |
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| T |
35911655 |
actgtgacatagcctgaatattggtcaaaatttaccccatagggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtgcaa |
35911754 |
T |
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| Q |
278 |
cat |
280 |
Q |
| |
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||| |
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| T |
35911755 |
cat |
35911757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 35928889 - 35929083
Alignment:
| Q |
78 |
atttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatca |
177 |
Q |
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|||| |||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| | |
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| T |
35928889 |
atttatacctccattgagccacaaaactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagctctcttccagcctcaggatta |
35928988 |
T |
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| Q |
178 |
actgtgacatagcctgaatattgatcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgagg |
272 |
Q |
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| T |
35928989 |
acagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgccttagcccctcttgagg |
35929083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 80 - 274
Target Start/End: Original strand, 35915944 - 35916138
Alignment:
| Q |
80 |
ttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaac |
179 |
Q |
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||||||||||||||| ||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35915944 |
ttttacctccattgaaccacagtactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaac |
35916043 |
T |
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| Q |
180 |
tgtgacatagcctgaatattgatcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtg |
274 |
Q |
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||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | |||||||| ||| | ||||| |||||||||||| |
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| T |
35916044 |
tgtgacatagcctgaatattggtcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctcttgaggtg |
35916138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 274
Target Start/End: Original strand, 35922212 - 35922407
Alignment:
| Q |
79 |
tttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaa |
178 |
Q |
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|||||||||||||| ||||| |||| ||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35922212 |
tttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaa |
35922311 |
T |
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| Q |
179 |
ctgtgacatagcctgaatattgatcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtg |
274 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||| | ||||| |||||||||||| |
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| T |
35922312 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtg |
35922407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 276
Target Start/End: Original strand, 35935513 - 35935724
Alignment:
| Q |
65 |
agtttatgagactatttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttcc |
164 |
Q |
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||||| |||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
35935513 |
agtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgctcttcc |
35935612 |
T |
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| Q |
165 |
agtctcaggatcaactgtgacatagcctgaatattgatcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccc |
264 |
Q |
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| |||||| ||||| || ||||| || || ||||| ||||||| || |||| |||||||||||||||||| | |||||||||||| | ||||| || |
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| T |
35935613 |
ggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcc |
35935712 |
T |
|
| Q |
265 |
tcttgaggtgct |
276 |
Q |
| |
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|||||||||||| |
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| T |
35935713 |
tcttgaggtgct |
35935724 |
T |
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