View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_121 (Length: 294)
Name: NF1773_low_121
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 46481709 - 46481997
Alignment:
| Q |
1 |
ttaagaaagagccttattttgttcagtccaaataactaatatctatctaatgtaaaccaaactcaaattcaaacttatacctgaaaggtttgatctcatt |
100 |
Q |
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| T |
46481709 |
ttaagaaagagccttattttgttcagtccaaataactaatatctatctaatgtaaaccaaactcaaattcaaacttatacctgaaaggtttgatctcatt |
46481808 |
T |
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| Q |
101 |
tcttttattgcgtattttcaacaaaggtaagtttatgttttcttctccttatgaagctgtaccgtatatttatgtgaaatgcaccgtgcaagttatgttg |
200 |
Q |
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| T |
46481809 |
tcttttattgcgtattttcaacaaaggtaagtttatgttttcttctccttatgaagctgtaccgtatatttatgtgaaatgcaccgtgcaagttatgttg |
46481908 |
T |
|
| Q |
201 |
gttttttggatgaaattcggttgatagttttcctcactttagattttgaagataaagccaaataagaaagatatagattctgtgctgct |
289 |
Q |
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| T |
46481909 |
gttttttggatgaaattcggttgatagttttcctcactttagattttgaagataaagccaaataagaaagatatagattttgtgctgct |
46481997 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 26613758 - 26613718
Alignment:
| Q |
241 |
agattttgaagataaagccaaataagaaagatatagattct |
281 |
Q |
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|||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
26613758 |
agatattgaagataaatccaaagaagaaagatatagattct |
26613718 |
T |
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