View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_124 (Length: 287)

Name: NF1773_low_124
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_124
NF1773_low_124
[»] chr4 (19 HSPs)
chr4 (21-277)||(3671246-3671502)
chr4 (130-264)||(55636898-55637032)
chr4 (21-129)||(55619199-55619307)
chr4 (21-129)||(55626503-55626611)
chr4 (21-129)||(55657549-55657657)
chr4 (21-115)||(52983076-52983170)
chr4 (130-268)||(52983286-52983424)
chr4 (21-123)||(54860975-54861077)
chr4 (21-129)||(54630127-54630235)
chr4 (21-121)||(55663780-55663880)
chr4 (131-264)||(54861185-54861318)
chr4 (131-264)||(54629891-54630024)
chr4 (21-129)||(55637131-55637239)
chr4 (130-264)||(55663993-55664127)
chr4 (130-264)||(55619406-55619540)
chr4 (130-264)||(55626710-55626844)
chr4 (130-264)||(55657756-55657890)
chr4 (214-264)||(51316255-51316305)
chr4 (175-264)||(50190412-50190501)
[»] chr8 (2 HSPs)
chr8 (131-264)||(9891185-9891318)
chr8 (21-132)||(9891426-9891537)
[»] chr2 (2 HSPs)
chr2 (130-263)||(13403306-13403439)
chr2 (21-129)||(13403538-13403646)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 3671246 - 3671502
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3671246 ctccaaccttcagaaaattctcaagacattgcaaacagacagtaacaatttttggatcagagcaaacgagcaaatcacacagaggcttaatgcaaccctg 3671345  T
Q  121 gctcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaaga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671346 gctcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaaga 3671445  T
Q  221 agattgaccagaggggcaatcagaccagcttcaataacagcctgtatctgctctctg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3671446 agattgaccagaggggcaatcagaccagcttcaataacagcctgtatctactctctg 3671502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 55637032 - 55636898
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||| |||  | |||||||||| ||||||||||||||||||||     
T  55637032 atacttgatttgctcatgggtaccaccagatgtaacattaaagagtgcccatgcagcttcttttgcaatgtcaaactcggcattttgaagaagattgact 55636933  T
Q  230 agaggggcaatcagaccagcttcaataacagcctg 264  Q
    || ||||||||||||| ||||||||||||||||||    
T  55636932 aggggggcaatcagactagcttcaataacagcctg 55636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 55619199 - 55619307
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  55619199 ctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatg 55619298  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  55619299 gctcaccaa 55619307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 55626503 - 55626611
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  55626503 ctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatg 55626602  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  55626603 gctcaccaa 55626611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 55657549 - 55657657
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  55657549 ctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatg 55657648  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  55657649 gctcaccaa 55657657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 52983076 - 52983170
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaa 115  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52983076 ctccaaccttcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaa 52983170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 52983286 - 52983424
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| |||||||||| ||||||  | | | ||||||||||||||||||||||| ||||| |||  | |||||||||| |||| |||||||||||||||     
T  52983286 atacttgatttgctcaggggtaccactaaacgtagcattagagagtgcccatgcagcttcttttttaatgtcaaactcggcatattgaagaagattgact 52983385  T
Q  230 agaggggcaatcagaccagcttcaataacagcctgtatc 268  Q
    || || |||||||||||||||||||||||||||||||||    
T  52983386 aggggagcaatcagaccagcttcaataacagcctgtatc 52983424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 54860975 - 54861077
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    ||||||||||||||| ||||||||||| || || |||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  54860975 ctccaaccttcagaatattctcaagaccttctagacagacagtaacaattcttggatcagggcaaaccatcaaatcacacagaggcttaatgcaaccctg 54861074  T
Q  121 gct 123  Q
    |||    
T  54861075 gct 54861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 54630235 - 54630127
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||||||| |||||||||||||||| || || ||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  54630235 ctccaacctttagaaaattctcaagaccttctagacaaacagtaactattcttggatcagggcaaactagcaaatcacacagaggcttaatgcaaccctg 54630136  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  54630135 gctcaccaa 54630127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 55663780 - 55663880
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    ||||||||| ||||||||||||||||| || ||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  55663780 ctccaacctccagaaaattctcaagaccttctaagcagacagcaacaattgttggatcagggcaaacaagcaaatcacacagaggtttaatgcaaccctg 55663879  T
Q  121 g 121  Q
    |    
T  55663880 g 55663880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 54861185 - 54861318
Alignment:
Q  131 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 230  Q
    |||| ||||||||| |||||||  || ||||||||||||| |||||||||||| ||||| |||  | |||||||||| |||||||||||||||||||| |    
T  54861185 tacttgatttgctcgtgggtaccacctgatgtagcattagtgagtgcccatgcagcttcttttttaatgtcaaactcagcattttgaagaagattgacta 54861284  T
Q  231 gaggggcaatcagaccagcttcaataacagcctg 264  Q
    | || ||||||| |||||||||||| ||||||||    
T  54861285 ggggagcaatcaaaccagcttcaatgacagcctg 54861318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 264
Target Start/End: Complemental strand, 54630024 - 54629891
Alignment:
Q  131 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 230  Q
    |||| ||| ||||| |||||||  ||||||||| |||||| |||||||  |||  ||||||||  | |||||||||| |||||||||||||||||||| |    
T  54630024 tacttgatatgctcgtgggtaccaccagatgtaacattagtgagtgcctgtgcaacttcctttgtaatgtcaaactctgcattttgaagaagattgacta 54629925  T
Q  231 gaggggcaatcagaccagcttcaataacagcctg 264  Q
    | || |||||||||||||||||||||||||||||    
T  54629924 ggggagcaatcagaccagcttcaataacagcctg 54629891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 55637239 - 55637131
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    ||||||||||||||||||||||||||| || || ||| |||||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||| ||    
T  55637239 ctccaaccttcagaaaattctcaagaccttctagacaaacagtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaaccttg 55637140  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  55637139 gctctccaa 55637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 55663993 - 55664127
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| ||||||||||||||||| |||||||||||||||| | | ||||||||| ||||| |||  |   ||||| || ||||||||||||||||| ||     
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcattaaataatgcccatgcagcttctttttgaacttcaaaatcggcattttgaagaagatttact 55664092  T
Q  230 agaggggcaatcagaccagcttcaataacagcctg 264  Q
    || || ||||| |||||||||||||||||||||||    
T  55664093 aggggagcaattagaccagcttcaataacagcctg 55664127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 55619406 - 55619540
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55619406 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55619505  T
Q  230 agaggggcaatcagaccagcttcaataacagcctg 264  Q
    || || ||||||||||||||||  |||||||||||    
T  55619506 aggggagcaatcagaccagctttgataacagcctg 55619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 55626710 - 55626844
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||| ||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55626710 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcacatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55626809  T
Q  230 agaggggcaatcagaccagcttcaataacagcctg 264  Q
    || || ||||||||||||||||| |||||||||||    
T  55626810 aggggagcaatcagaccagcttcgataacagcctg 55626844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 55657756 - 55657890
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55657756 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55657855  T
Q  230 agaggggcaatcagaccagcttcaataacagcctg 264  Q
    || || ||||||||||||||||  |||||||||||    
T  55657856 aggggagcaatcagaccagctttgataacagcctg 55657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 51316305 - 51316255
Alignment:
Q  214 ttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 264  Q
    ||||||||||| |||||| || ||||| |||||||||||||||||||||||    
T  51316305 ttgaagaagatcgaccaggggagcaatgagaccagcttcaataacagcctg 51316255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 50190412 - 50190501
Alignment:
Q  175 tgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 264  Q
    ||||||||| ||||| |||  | |||||||||| ||||||||||||||  |||| || || ||||| ||||| || ||||||||||||||    
T  50190412 tgcccatgcagcttcttttttaatgtcaaactctgcattttgaagaagtctgacaagtggagcaataagaccggcatcaataacagcctg 50190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 131 - 264
Target Start/End: Complemental strand, 9891318 - 9891185
Alignment:
Q  131 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 9891219  T
Q  231 gaggggcaatcagaccagcttcaataacagcctg 264  Q
    ||||||||||||||||||||||||||||||||||    
T  9891218 gaggggcaatcagaccagcttcaataacagcctg 9891185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 9891537 - 9891426
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891537 ctccaaccttcagaaaatcctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 9891438  T
Q  121 gctcgccaaata 132  Q
    ||||||||||||    
T  9891437 gctcgccaaata 9891426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 130 - 263
Target Start/End: Complemental strand, 13403439 - 13403306
Alignment:
Q  130 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 229  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||  | ||||||| || |||||||||||||||||||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtgcccatgcagcttcttttttaatgtcaaattcggcattttgaagaagattgacc 13403340  T
Q  230 agaggggcaatcagaccagcttcaataacagcct 263  Q
    ||||| |||||||| || ||||||||||||||||    
T  13403339 agaggagcaatcagtccggcttcaataacagcct 13403306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 13403646 - 13403538
Alignment:
Q  21 ctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctg 120  Q
    |||||| |||||||| ||||||||||| || ||||||||| ||||||||| ||||||| | ||||||||| | |||||||||||||||||||||||||||    
T  13403646 ctccaatcttcagaatattctcaagaccttctaaacagacggtaacaattcttggatcggggcaaacaagaagatcacacagaggcttaatgcaaccctg 13403547  T
Q  121 gctcgccaa 129  Q
    |||| ||||    
T  13403546 gctcaccaa 13403538  T

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