View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_127 (Length: 277)
Name: NF1773_low_127
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_127 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 3116007 - 3115825
Alignment:
| Q |
4 |
agggtgatcggttcatatcacatctactgacctaaactttattttgtcactggtcggttcatataaaaaatttcctaccgaaattaattgcatttccacc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3116007 |
agggtgatcggttcatatcacatctactgacctaaactttattttgtcactggtcggttcatataaaaaatttcctaccgaaattaattgcatttccacc |
3115908 |
T |
|
| Q |
104 |
aaaggctaattaatgcattcaaaggaaaattaccagactaaccacatcttaaaatgcaacgccaagtaatcatataaaactat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3115907 |
aaaggctaattaatgcattcaaaggaaagttaccagactaaccacatcttaaaatgcaacgccgagtaatcatataaaactat |
3115825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 3115801 - 3115709
Alignment:
| Q |
175 |
atataaaactatcatatcatagtctatattaagcnnnnnnntacactccacaatataatcctctcaaccatcaagaagcatccaacagtataat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3115801 |
atataaaactatcatatcatagtctatattaagcaaaaaa-tacactccacaatataatcctctcaaccatcaagaagcatccaacaatataat |
3115709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University