View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_130 (Length: 276)
Name: NF1773_low_130
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_130 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 1424344 - 1424619
Alignment:
| Q |
1 |
tgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtggaaataattcgtagtaagcctcac |
100 |
Q |
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| T |
1424344 |
tgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtggaaataattcttagtaagcctcac |
1424443 |
T |
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| Q |
101 |
cttggcatttctgacacatggaaccgtcaattcacgtggaaacagccgagtaacaaaacatccaaagaacaatcgaagaaaacctcaaccattgggagga |
200 |
Q |
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| T |
1424444 |
cttggcatttctgacacatggaaccgtcaattcacgtggaaacagccgagtaacaacacatccaaagaacaatcgaagaaaacctcaaccattgggagga |
1424543 |
T |
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| Q |
201 |
aatgtcatcattgtggagctgataatactccgcaatggcgtgcaggtccagatggtccaaaaacactttgtaatgc |
276 |
Q |
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| T |
1424544 |
aatgtcatcattgtggagctgataatactccgcaatggcgtgtaggtccagatggtccaaaaacactttgtaatgc |
1424619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 1424122 - 1424313
Alignment:
| Q |
85 |
tcgtagtaagcctcaccttggcatttctgacacatggaaccgtcaattcacgtggaaacagccgagtaacaaaacatccaaagaacaatcgaagaaaacc |
184 |
Q |
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| T |
1424122 |
tcgtagtaagcctcgccttggcatttctgatacctggaaccatcaattcgcgtggaaacaacctaataacaaaacttccaaagaacaagcgaaacaaacc |
1424221 |
T |
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| Q |
185 |
tcaaccattgggaggaaatgtcatcattgtggagctgataatactccgcaatggcgtgcaggtccagatggtccaaaaacactttgtaatgc |
276 |
Q |
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| T |
1424222 |
tcaaccattgggaggcaatgtcatcattgtggagctgataatactccgctatggcgtacaggtcctggtggtccaaaaacactttgtaatgc |
1424313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1424650 - 1424732
Alignment:
| Q |
1 |
tgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtggaaataa |
83 |
Q |
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| T |
1424650 |
tgtacctgaataccgccctgcaaatagcccaactttttgcagcaacgtgcattctaattcccacagaaaagtagtggaaataa |
1424732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 17601897 - 17601749
Alignment:
| Q |
128 |
caattcacgtggaaacagccgagtaacaaaacatccaaagaacaatcgaagaaaacctcaaccattgggaggaaatgtcatcattgtggagctgataata |
227 |
Q |
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| T |
17601897 |
caattcccatggaaacaaccgagtaccaaaacttccaaagagaaagtgaaacaaaccccaaccatcgggaggaaatgtcatcattgtggagttgatgata |
17601798 |
T |
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| Q |
228 |
ctccgcaatggcgtgcaggtccagatggtccaaaaacactttgtaatgc |
276 |
Q |
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| T |
17601797 |
ctccacaatggcgtgcaggtccaaatggcccaaagacgctttgtaatgc |
17601749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17601718 - 17601641
Alignment:
| Q |
1 |
tgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtgga |
78 |
Q |
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| T |
17601718 |
tgtacctgaataccgtcctgcaaatagcccaacttttcgcagtgacgtgcattctaattcccacaggaaagtagtgga |
17601641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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