View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_134 (Length: 271)
Name: NF1773_low_134
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_134 |
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| [»] scaffold0140 (2 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 33481 - 33326
Alignment:
| Q |
23 |
aactccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttg-acataaaatcattttctataagcaaagtctacaagtg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
33481 |
aactccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttgtatataaaatcattttctataagcaaagtctacaagtg |
33382 |
T |
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| Q |
122 |
caaatgacaaaggattctaattggtttagccaaaacatgatatatgattttagagc |
177 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381 |
caaatgacaaaggagtctaattggtttagccaaaacatgatatatgattttagagc |
33326 |
T |
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Target: scaffold0140; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 33287 - 33239
Alignment:
| Q |
214 |
cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33287 |
cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg |
33239 |
T |
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