View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_135 (Length: 270)
Name: NF1773_low_135
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_135 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 36982285 - 36982536
Alignment:
| Q |
1 |
acctggaaatcctcctgcaacaatttccgattttacccttggtgaacctgatttttatgatgttagtcttgtagatggtttcaacttgcctatagcaata |
100 |
Q |
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| T |
36982285 |
acctggaaatcctcctgcaacaatttccgattttacccttggtgaacctgatttttatgatgttagtcttgtagatggtttcaacttgcctatagcaata |
36982384 |
T |
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| Q |
101 |
aaggctatcaaatggaagtggtaattgtagcactgttggttgcgatggagatttgaggcagaattgtccatcagagttggctttaaaggaaaatgataag |
200 |
Q |
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| T |
36982385 |
aaggctatc-aatggaagtggtaattgtagcactgttggttgtgatggagatttgaggcagaattgtccatcagagttggctttaaaggaaaatgat-ag |
36982482 |
T |
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| Q |
201 |
agttattgcttgtaagagtgcatgtggtgtattcaatactgaagagtattgttg |
254 |
Q |
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| T |
36982483 |
agttattgcttgtaagagtgcatgtggtgtattcaatactgaagagtattgttg |
36982536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 36975545 - 36975632
Alignment:
| Q |
145 |
atggagatttgaggcagaattgtccatcagagttggctttaaaggaaaatgataagagttattgcttgtaaga--gtgcatgtggtgt |
230 |
Q |
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| T |
36975545 |
atggagatttgaggtagaattgtccatcagagttggctttaaaggaaaatgataagagttatttcatgtaagagtgtgcatgtggtgt |
36975632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 36963123 - 36963260
Alignment:
| Q |
43 |
tgaacctgatttttatgatgttagtcttgtagatggtttcaacttgcctatagcaataaaggctatcaaatggaa--gtggtaattgtagcactgttggt |
140 |
Q |
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| T |
36963123 |
tgaacctgatttttatgatgttagtcttacagatggcttcaatttacctatagcaatagaagctattaaatggaagtgtggtaattgtggcagtgttggt |
36963222 |
T |
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| Q |
141 |
tgcgatggagatttgaggcagaattgtccatcagagtt |
178 |
Q |
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| T |
36963223 |
tgtgaagatgatttgaggcattgttgtccatcaaagtt |
36963260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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