View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_136 (Length: 270)
Name: NF1773_low_136
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_136 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 30396577 - 30396346
Alignment:
| Q |
19 |
agtttgatgaaaatgacctcaatgtgaacaatccaattgttagctccttcatcatgtccttgatcaaaatggtaagctggggggcttccatccaaacaca |
118 |
Q |
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| T |
30396577 |
agtttaatgaaagggacctcaatgtgaacaatccaattgttagctccttcatcatgtccttgatcaaaatggtaagctggggggcttccatccaaacaca |
30396478 |
T |
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| Q |
119 |
ctgcacaagaagttaacacttcaacttctctactattatatacataaacatattacaaacataaaatcaagaactnnnnnnntatataaatatcagtaat |
218 |
Q |
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| T |
30396477 |
ctgcacaagaagttaacacttcaacttctctactattatatacataaacatattacaaacataaaatcaagaactaaaaaaatatataaataacagttat |
30396378 |
T |
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| Q |
219 |
tgaaacagcaaaagaaaatcctcaccagctcc |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30396377 |
tgaaacagcaaaagaaaatcctcaccagctcc |
30396346 |
T |
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