View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_142 (Length: 254)
Name: NF1773_low_142
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_142 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 51406716 - 51406958
Alignment:
| Q |
12 |
agcaaaggagatagaaaaattgatctttaaagactttccttcgcaaacacagtgtgatgctcaaatacgaaagataacttaacctataagtaattaatta |
111 |
Q |
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| T |
51406716 |
agcaaaggagatagaaaaattgatctttaaagactttccttcgcaaacacagtgtgatgctcaaatacgaaagataacttaacctataagtaattaatta |
51406815 |
T |
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| Q |
112 |
atgttacagtgattactatagtctgtcaatagtggcctttgttgtctctttcaaataagattgactccaatgattgatcgagaaaaggatagacttccta |
211 |
Q |
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| T |
51406816 |
atgttacagtgattactatagtctgtcaatagtggcctttgttgtctctttcaaataagattgactccaatgattgatcgagaaaaggatagacttccta |
51406915 |
T |
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| Q |
212 |
aaactcactatgtacctatcctactaatgtttaagaacaaacc |
254 |
Q |
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| T |
51406916 |
aaactcactatgtacctatcctactaatgtttaagaacaaacc |
51406958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 51378873 - 51378956
Alignment:
| Q |
12 |
agcaaaggagatagaaaaattgatctttaaagactttccttcgcaaacacagtgtgatgctcaaatacgaaagataacttaacc |
95 |
Q |
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| T |
51378873 |
agcaaaggagatagaaaaattgatctttaaagactttccttcgcaaacacagtgtgatgctcaaatacgaaagacaacttaacc |
51378956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 51378987 - 51379028
Alignment:
| Q |
149 |
tttgttgtctctttcaaataagattgactccaatgattgatc |
190 |
Q |
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| T |
51378987 |
tttgttgtctctttcaaataacattgactccaatgattgatc |
51379028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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