View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_146 (Length: 248)
Name: NF1773_low_146
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_146 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 5187829 - 5187613
Alignment:
| Q |
14 |
gaaggagttatggaatttgcttattatagttcaaacattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
113 |
Q |
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| T |
5187829 |
gaaggagttatggaatttgcttattatagttcaaacattaatcaaccagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
5187730 |
T |
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| Q |
114 |
agtgattgttaggtatataacattgttttattctcattaatctgttagttagttatggacttacttgtctggcaagtaagctagtttgttatcaactaac |
213 |
Q |
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| T |
5187729 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttacttgtttggcaagtaagctagtttgttatcaactaac |
5187630 |
T |
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| Q |
214 |
ttttcatacgactctat |
230 |
Q |
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| T |
5187629 |
ttttcatacgactctat |
5187613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 4847446 - 4847505
Alignment:
| Q |
48 |
acattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaac |
107 |
Q |
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| T |
4847446 |
acattaatcaactagcagacatcaagactaaacctttgaagttagaagtattcttcaaac |
4847505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 4847911 - 4847949
Alignment:
| Q |
192 |
agctagtttgttatcaactaacttttcatacgactctat |
230 |
Q |
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| T |
4847911 |
agctagtttgttatcaactaacttttcatacgactctat |
4847949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 4847607 - 4847688
Alignment:
| Q |
113 |
gagtgattgttaggtatataacattgttttattctcattaatctgttagttagttatggacttacttgtctggcaagtaagctagt |
198 |
Q |
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| T |
4847607 |
gagtgattgttagatataaaaacttgttttattctcattagact----gttagttatggagttacttgttttgcaagtaagctagt |
4847688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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