View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_147 (Length: 248)
Name: NF1773_low_147
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_147 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24256257 - 24256486
Alignment:
| Q |
1 |
attaccctcatagctgctttcatcaaatgtaatgaattgtcctttcctttcaggtgttgcacctgataaattgttgtgtgccacactgaatacttcaagg |
100 |
Q |
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|||||||||||| |||||||||||||||||| | | ||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
24256257 |
attaccctcataactgctttcatcaaatgtactaagttgtcctttccattcaggtgttgcaccagataaattgttgtgcgccacactaaatacttcaagg |
24256356 |
T |
|
| Q |
101 |
gagtgcagtccagttagctgaggaggaattcggccactcaacatgttcaaagaaagatctaaactctcaacctgtaccaaatttgagaatgtagctggaa |
200 |
Q |
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|||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
24256357 |
tagtgcaatccacttagctgaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaattggagaatgttgctggaa |
24256456 |
T |
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| Q |
201 |
cactcccagttaaaaaattgttggacaagt |
230 |
Q |
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| |||||||||||| |||||||||||||| |
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| T |
24256457 |
ctttcccagttaaaagattgttggacaagt |
24256486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24241445 - 24241674
Alignment:
| Q |
1 |
attaccctcatagctgctttcatcaaatgtaatgaattgtcctttcctttcaggtgttgcacctgataaattgttgtgtgccacactgaatacttcaagg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24241445 |
attaccctcgtagctgctttcatcaaaagtactaaattgtcctttcatttcaggtgttgcacctgataaattgttgtgtgccacactaaatacttcaagg |
24241544 |
T |
|
| Q |
101 |
gagtgcagtccagttagctgaggaggaattcggccactcaacatgttcaaagaaagatctaaactctcaacctgtaccaaatttgagaatgtagctggaa |
200 |
Q |
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|||||| |||| ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24241545 |
tagtgcaatccacttagccgaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaatcagagaatgtagctggaa |
24241644 |
T |
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| Q |
201 |
cactcccagttaaaaaattgttggacaagt |
230 |
Q |
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| || || ||||| ||||||||||||| |
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| T |
24241645 |
tttttccggtgaaaaagttgttggacaagt |
24241674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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