View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_148 (Length: 245)
Name: NF1773_low_148
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_148 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 28420867 - 28421037
Alignment:
| Q |
20 |
taccaattcttttagctatgggcaatcctcttaaaagaaatatggtagtatcttcaagatcaatgtttgttaagatcaattgagaatcaattagtccatc |
119 |
Q |
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| T |
28420867 |
taccaattcttttagctatgggcaatcctcttaaaagaaatatggtagtatcttcaagatcaatgtttgttaagatcaattgagaatcaattagtc---- |
28420962 |
T |
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| Q |
120 |
gattgatttgttttcgattgtaccacaatctagctgaatcctattgaactaaggttgaacgacatctaattcaatt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28420963 |
-attgatttgttttcgattgtaccacaatctagctgaatccgattgaactaaggttgaacgacatctaattcaatt |
28421037 |
T |
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