View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_15 (Length: 630)

Name: NF1773_low_15
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_15
NF1773_low_15
[»] chr7 (5 HSPs)
chr7 (7-321)||(29843043-29843355)
chr7 (432-557)||(29842785-29842910)
chr7 (54-251)||(41146254-41146451)
chr7 (54-251)||(12352120-12352317)
chr7 (343-404)||(29842908-29842969)
[»] chr8 (2 HSPs)
chr8 (15-244)||(9182075-9182304)
chr8 (15-244)||(11625969-11626198)
[»] chr6 (1 HSPs)
chr6 (15-244)||(10160299-10160528)
[»] chr5 (1 HSPs)
chr5 (54-251)||(23149769-23149966)
[»] chr4 (1 HSPs)
chr4 (54-251)||(32498046-32498243)
[»] chr3 (1 HSPs)
chr3 (54-251)||(2500597-2500794)
[»] chr1 (1 HSPs)
chr1 (15-247)||(50181341-50181573)
[»] chr2 (1 HSPs)
chr2 (134-229)||(647055-647148)
[»] scaffold0007 (1 HSPs)
scaffold0007 (140-247)||(190651-190758)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 29843355 - 29843043
Alignment:
Q  7 tcgaagaatatttagcttccaagatccttgatagtaaagaggttgactcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagctta 106  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  29843355 tcgaaaaatatttagcttccaagatccttgatggtaaagaggttgactcggataagagtttttaactttgcttaccaaaaatagaaaagttaaaagctta 29843256  T
Q  107 taggttctggaagcccagacctcctaaacttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaa 206  Q
    || |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||| || ||||||||    
T  29843255 tacgttctggaagcctagacctcctaaacttttgtgaagagtgagcttatcccatcacaaccaattaatgtcacaccacccattctttctaaatccctaa 29843156  T
Q  207 tgaaaggagttcatcatcctttctatctcatcacaaagagatgtattatcttaaaatattacttctttgtcctaaaataagttactttattgaaaatata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||| ||||||||||||||||||||||||||    
T  29843155 tgaaaggagttcatcatcctttctatctcatcacaaagagatgtactatcttaaaatattac--ctctgtcctgaaataagttactttattgaaaatata 29843058  T
Q  307 tgctatcatttatct 321  Q
    |||||||||||||||    
T  29843057 tgctatcatttatct 29843043  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 432 - 557
Target Start/End: Complemental strand, 29842910 - 29842785
Alignment:
Q  432 tcacttcgccaaaaaatttaccctcaaacacaagggcactttgtaacacagtactttaaccaaacaacgctatccatatccctctcatagcgagcattgt 531  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||     
T  29842910 tcactttgccaaaaaatttaccctcaaacacaagggcactttgtaacacagtactttaaccaaccaacgctatccatatccctctcgtagcgagcattgc 29842811  T
Q  532 tcaatccacaacaatggctacaaccc 557  Q
    ||||||||||||||||||||||||||    
T  29842810 tcaatccacaacaatggctacaaccc 29842785  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 41146451 - 41146254
Alignment:
Q  54 tcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttctggaagcccagacctcctaaacttttgtgacgagtgagct 153  Q
    |||||||| |||||  ||||||||||||| || |||||||  ||||| ||||  ||||||  |||||| | |||||||  ||||||||| ||||||||||    
T  41146451 tcggataagagtttccaactttgcttaccgagcatagaaagattaaatgcttcgaggttcctgaagcctaaacctccttgacttttgtggcgagtgagct 41146352  T
Q  154 tgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatcacaaagagatgta 251  Q
    ||||||| |  | |||||| ||  |||| || || ||||||||||| ||| ||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  41146351 tgtcccaacgtagccaatttattccacgacgaccgttctttttagagccccaataaaatgagttcatcatcttttcaatctcatcacaaagagatgta 41146254  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 12352120 - 12352317
Alignment:
Q  54 tcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttctggaagcccagacctcctaaacttttgtgacgagtgagct 153  Q
    |||||||| |||||  ||||||||||||| || |||||||  ||||| ||||  ||||||  |||||| | |||||||  ||||||||| ||||| ||||    
T  12352120 tcggataagagtttccaactttgcttaccgagcatagaaagattaaatgcttcgaggttcctgaagcctaaacctccttgacttttgtggcgagttagct 12352219  T
Q  154 tgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatcacaaagagatgta 251  Q
    ||||||| |  | |||||| ||  |||| || || ||||||||||| ||| ||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  12352220 tgtcccaacgtagccaatttattccacgacgaccgttctttttagagccccaataaaatgagttcatcatcttttcaatctcatcacaaagagatgta 12352317  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 29842969 - 29842908
Alignment:
Q  343 tttcttccttttgagcatttacagttttattttcaaccccttatccattcttgtcccactca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29842969 tttcttccttttgagcatttacagttttattttcaaccccttatccattcttgtcccactca 29842908  T

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Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 9182075 - 9182304
Alignment:
Q  15 tatttagcttccaagatccttgatagtaaagaggttgactcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttct 114  Q
    ||||||||||  | |||||||||||||||||||||||| |||||||| |||||  |||||||||||||||| ||||| | ||||||||||| |||||||     
T  9182075 tatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagaggttaaaagcttctaggttcc 9182174  T
Q  115 ggaagcccagacctcctaaacttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaagga 214  Q
    ||||||| || || ||||| ||||||||||| || ||||| ||||||| ||||||||||||| | || |||||||||||||| || ||| |||  || ||    
T  9182175 ggaagcctaggccccctaagcttttgtgacgtgtaagcttttcccatcgcaaccaattaatgcctcgtcgcccattctttttcgagccccaatagaaaga 9182274  T
Q  215 gttcatcatcctttctatctcatcacaaag 244  Q
    |||||||||||||||||||||||| |||||    
T  9182275 gttcatcatcctttctatctcatcgcaaag 9182304  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 11626198 - 11625969
Alignment:
Q  15 tatttagcttccaagatccttgatagtaaagaggttgactcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttct 114  Q
    ||||||||||  | |||||||||||||||||||||||| |||||||| |||||  |||||||||||||||| ||||| | ||||||||||| |||||||     
T  11626198 tatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagaggttaaaagcttctaggttcc 11626099  T
Q  115 ggaagcccagacctcctaaacttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaagga 214  Q
    ||||||| || || ||||| ||||||||||| || ||||| ||||||| ||||||||||||| | || |||||||||||||| || ||| |||  || ||    
T  11626098 ggaagcctaggccccctaagcttttgtgacgtgtaagcttttcccatcgcaaccaattaatgcctcgtcgcccattctttttcgagccccaatagaaaga 11625999  T
Q  215 gttcatcatcctttctatctcatcacaaag 244  Q
    ||||||||||||||||||||| || |||||    
T  11625998 gttcatcatcctttctatctcttcgcaaag 11625969  T

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Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 10160299 - 10160528
Alignment:
Q  15 tatttagcttccaagatccttgatagtaaagaggttgactcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttct 114  Q
    ||||||||||  | |||||||||||||||||||||||| |||||||| |||||  |||||||||||||||| ||||| | ||||||||||| |||||||     
T  10160299 tatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagaggttaaaagcttctaggttcc 10160398  T
Q  115 ggaagcccagacctcctaaacttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaagga 214  Q
    ||||||| || || ||||| ||||||||||| || ||||| ||||||| ||||||||||||| | || |||||||||||||| || ||| |||  || ||    
T  10160399 ggaagcctaggccccctaagcttttgtgacgtgtaagcttttcccatcgcaaccaattaatgcctcgtcgcccattctttttcgagccccaatagaaaga 10160498  T
Q  215 gttcatcatcctttctatctcatcacaaag 244  Q
    |||||||||||||||||||||||| |||||    
T  10160499 gttcatcatcctttctatctcatcgcaaag 10160528  T

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Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 23149966 - 23149769
Alignment:
Q  54 tcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttctggaagcccagacctcctaaacttttgtgacgagtgagct 153  Q
    |||||||| |||||  ||||||||||||| || |||||||  ||||| ||||  ||||||  |||||| | |||||||  ||||||||| ||||||||||    
T  23149966 tcggataagagtttccaactttgcttaccgagcatagaaagattaaatgcttcgaggttcctgaagcctaaacctccttgacttttgtggcgagtgagct 23149867  T
Q  154 tgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatcacaaagagatgta 251  Q
    ||||||| |  | |||||| ||  |||| || || ||||||||||| ||| ||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  23149866 tgtcccaacgtagccaatttattccacgacgaccgttctttttagagccccaataaaatgagttcatcatcttttcgatctcatcacaaagagatgta 23149769  T

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Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 32498243 - 32498046
Alignment:
Q  54 tcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttctggaagcccagacctcctaaacttttgtgacgagtgagct 153  Q
    |||||||| |||||  ||||||||||||| || |||||||  ||||| ||||  ||||||  |||||| | |||||||  ||||||||| ||||||||||    
T  32498243 tcggataagagtttccaactttgcttaccgagcatagaaagattaaatgcttcgaggttcctgaagcctaaacctccttgacttttgtggcgagtgagct 32498144  T
Q  154 tgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatcacaaagagatgta 251  Q
    ||||||| |  | |||||| ||  |||| || || ||||||||||| ||| ||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  32498143 tgtcccaacgtagccaatttattccacgacgaccgttctttttagagccccaataaaatgagttcatcatcttttcaatctcatcacaaagagatgta 32498046  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 2500597 - 2500794
Alignment:
Q  54 tcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttctggaagcccagacctcctaaacttttgtgacgagtgagct 153  Q
    |||||||| |||||  ||||||||||||| || |||||||  ||||| ||||  ||||||  |||||| | |||||||  ||||||||| ||||| ||||    
T  2500597 tcggataagagtttccaactttgcttaccgagcatagaaagattaaatgcttcgaggttcctgaagcctaaacctccttgacttttgtggcgagtaagct 2500696  T
Q  154 tgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatcacaaagagatgta 251  Q
    ||||||| |  | |||||| ||  |||| || |  ||||||||||| ||| ||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  2500697 tgtcccaacgtagccaatttattccacgacgactgttctttttagagccccaataaaatgagttcatcatcttttcaatctcatcacaaagagatgta 2500794  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 50181573 - 50181341
Alignment:
Q  15 tatttagcttccaagatccttgatagtaaagaggttgactcggataatagtttttaactttgcttaccaagaatagaaaagttaaaagcttataggttct 114  Q
    ||||||||||  | ||||||||| | || ||||| ||| |||||||  |||||  ||||||||||||| || ||||||| ||| || ||||  || |||     
T  50181573 tatttagctttgaggatccttgagaatagagaggatgagtcggatagaagtttccaactttgcttaccgagcatagaaaggttgaatgcttcaagattcc 50181474  T
Q  115 ggaagcccagacctcctaaacttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaagga 214  Q
    ||||||| |||||||||  | | ||||| |||   ||||| ||||||| |||| | || ||  |||| || || ||||||||||| ||| |||  || ||    
T  50181473 ggaagcctagacctccttgagtgttgtgtcgaacaagcttttcccatcgcaactagttgataccacgacgaccgttctttttagaaccccaatagaatga 50181374  T
Q  215 gttcatcatcctttctatctcatcacaaagaga 247  Q
    ||||||||| ||||| ||||||||||| |||||    
T  50181373 gttcatcattctttcaatctcatcacagagaga 50181341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 647148 - 647055
Alignment:
Q  134 acttttgtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttc 229  Q
    |||||||||  |||||||||| ||||||  ||  ||||| ||| |||| ||||||||||||||||| ||| ||| ||| |||| ||||||||||||    
T  647148 acttttgtgtggagtgagcttatcccatttca--caattgatgccacgacgcccattctttttagaaccccaataaaaagagtgcatcatcctttc 647055  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 190651 - 190758
Alignment:
Q  140 gtgacgagtgagcttgtcccatcacaaccaattaatgtcacgccgcccattctttttagatccctaatgaaaggagttcatcatcctttctatctcatca 239  Q
    ||||||||| |||||||| ||||| |  ||||||||  |||| | ||||||||||||||| ||| ||| |||  ||||||| ||| ||||  | ||||||    
T  190651 gtgacgagttagcttgtctcatcatagtcaattaataccacgacacccattctttttagagccccaataaaactagttcattatcttttcagtttcatca 190750  T
Q  240 caaagaga 247  Q
    ||||||||    
T  190751 caaagaga 190758  T

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