View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_157 (Length: 235)
Name: NF1773_low_157
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_157 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 1663740 - 1663835
Alignment:
| Q |
27 |
ctaagaaaattttgtcattgaagcattttgtgaaaatgaagctttttcccctataaatcaggataagcaaattattcttttcatgaaatttagtta |
122 |
Q |
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| T |
1663740 |
ctaaggaaattttgtcattgaagcattttgtgaaaatgaagctttttcccctataaatcaggataagcaaattattcttttcatgaaatttagtta |
1663835 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 1663919 - 1663979
Alignment:
| Q |
159 |
tccctccacatacggtaccttacattgagaatgaaacgaatagcgaaaacaaagaaaaagt |
219 |
Q |
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| T |
1663919 |
tccctccacatacggtaccttacattgagaatgaaacgaatagcgaaaacaaagaaaaagt |
1663979 |
T |
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