View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_16 (Length: 624)
Name: NF1773_low_16
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 45343112 - 45342774
Alignment:
| Q |
18 |
agtgtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgataaggggagatcttttcttaagttttgtcaaattacctaaaatta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45343112 |
agtgtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgataaggggagatcttttcttaagttttgtcaaattacctaaaatta |
45343013 |
T |
|
| Q |
118 |
gatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctcatacgagattgtcatatctgttgaaagtggtgcaattggagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45343012 |
gatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctcgtacgagattgtcatatctgttgaaagtggtgcaattggagaa |
45342913 |
T |
|
| Q |
218 |
attcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtcaaagtgatgctg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45342912 |
attcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtcaaagtaatgctg |
45342813 |
T |
|
| Q |
318 |
ggacctttaaccattaaattaattctacctgtcttggtg |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45342812 |
ggacctttaaccattaaattaattctacctgtcttggtg |
45342774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 358 - 610
Target Start/End: Complemental strand, 45342735 - 45342496
Alignment:
| Q |
358 |
attcccaatgcatatttgagatgcatggagttagaagacattgctgaatttgcagacgatgatgagaaatattattatagtgttgtattcgtatgatgaa |
457 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
45342735 |
attcccaatgcatatttgagatg----gagttagaagacattgctgaatttgcagacgatgatgacaaatattat---agtgttgtattcgtatgatgaa |
45342643 |
T |
|
| Q |
458 |
gtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
557 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342642 |
gtgttattttgaaaattaaaaagatgctctgtt-----ggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
45342548 |
T |
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| Q |
558 |
accttaaaacttttggcatatttgttcacgaaatatggtatcacattcacagg |
610 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45342547 |
acctt-aaacttttgacatatttgttcacgaaatatggtatcacattcacagg |
45342496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 490 - 610
Target Start/End: Complemental strand, 45347089 - 45346970
Alignment:
| Q |
490 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaa |
589 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
45347089 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaatacctt-aaacttttgacatatttgttcacgaa |
45346991 |
T |
|
| Q |
590 |
atatggtatcacattcacagg |
610 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45346990 |
atatggtatcacattcacagg |
45346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 344
Target Start/End: Complemental strand, 48843634 - 48843494
Alignment:
| Q |
203 |
ggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgcaagtttgttaagcccctgtcacattttca |
302 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||| ||||| ||||||| |
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| T |
48843634 |
ggtgaaattggagaaattgttggtggtacaatgctacctgcacttgtggataagttgatagagttggatgtaagtttgtt-ggcccttgtcaaattttca |
48843536 |
T |
|
| Q |
303 |
gtcaaagtgatgctgggacctttaaccattaaattaattcta |
344 |
Q |
| |
|
||||||| | |||||||| ||| |||| ||||||||||||| |
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| T |
48843535 |
gtcaaagaaaagctgggacatttgaccaataaattaattcta |
48843494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 48854751 - 48854814
Alignment:
| Q |
21 |
gtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgataaggggagatctt |
86 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48854751 |
gtatgcattttgattgcaaagtgtaatggtgaaacttat--tcatatattgataaggggagatctt |
48854814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 45370719 - 45370669
Alignment:
| Q |
382 |
atggagttagaagacattgctgaatttgcagacgatgatgagaaatattat |
432 |
Q |
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| T |
45370719 |
atggagttagaagacattgttgaatttgcagatgatgatgagaaatgttat |
45370669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 48855585 - 48855651
Alignment:
| Q |
195 |
ttgaaagtggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgat |
261 |
Q |
| |
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||||| |||||||| |||||||| | ||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
48855585 |
ttgaaggtggtgcagttggagaagctgttggtggtacaatgctacctgaacttgtggataagttgat |
48855651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 48855813 - 48855852
Alignment:
| Q |
388 |
ttagaagacattgctgaatttgcagacgatgatgagaaat |
427 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||| |
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| T |
48855813 |
ttagaagatattgctgaatttgcagatgatgatgagaaat |
48855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 591
Target Start/End: Original strand, 48865371 - 48865518
Alignment:
| Q |
438 |
tgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataat |
537 |
Q |
| |
|
||||| |||| |||||||||||||||||| || ||||||||||||||| || |||| ||||| ||||||||||||||||||||| ||| ||| |
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| T |
48865371 |
tgttgcattcttatgatgaagtgttatttccaagattaaaaagatgctccattgaattgg---tgtgatagagttcatttatacaatattgaaaaacaat |
48865467 |
T |
|
| Q |
538 |
tcatcttgccttcacctaataccttaaaacttttggcat-atttgttcacgaaat |
591 |
Q |
| |
|
| | || |||||| ||||| ||| ||||||||||||| |||||||||| |||| |
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| T |
48865468 |
tta---tgtcttcacataatagctt-aaacttttggcataatttgttcacaaaat |
48865518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 45349616 - 45349561
Alignment:
| Q |
459 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
519 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||| |
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|
| T |
45349616 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45349561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 45359095 - 45359040
Alignment:
| Q |
459 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
519 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||| |
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|
| T |
45359095 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45359040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 35648899 - 35648798
Alignment:
| Q |
207 |
caattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtca |
306 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||| ||||| ||||| ||||||||||| |
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| T |
35648899 |
caattggagaaattgttggtggtacaatgctacctgcaattgtggataagttgatagagttggatgtaagtttgtt-agcccttgtcaaattttcagtca |
35648801 |
T |
|
| Q |
307 |
aag |
309 |
Q |
| |
|
||| |
|
|
| T |
35648800 |
aag |
35648798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 35649014 - 35648924
Alignment:
| Q |
108 |
cctaaaattagatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctcatacgagattgtcatatctgttgaaa |
200 |
Q |
| |
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||||||| |||||||||| |||||| ||||||||| ||||||||||||| | ||| ||||| ||| || ||||||||||| | |||||||| |
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| T |
35649014 |
cctaaaactagatttcttc-aacagttatatttttcctcaaaatttacttgcctct-tatgttgctcgtaggagattgtcatgtatgttgaaa |
35648924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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