View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_161 (Length: 232)
Name: NF1773_low_161
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_161 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40894254 - 40894033
Alignment:
| Q |
1 |
tcgcatgagtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatccacattatcct |
100 |
Q |
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| T |
40894254 |
tcgcatgagtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatccacattatcct |
40894155 |
T |
|
| Q |
101 |
cttaattgtgatcagggattgactagtctgcaatatgtctccattcttgcaacaccaatgatttatcttgacaaattcattgcaactacttaaatacccc |
200 |
Q |
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| T |
40894154 |
cttaattgtgatcagcgattgactagtctgcaatatgtctccattcttgcaacaccaatgatttatcttgacaaattcattgcaactacttaaatacccc |
40894055 |
T |
|
| Q |
201 |
atgcactgttttttcttctctg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40894054 |
atgcactgttttttcttctctg |
40894033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 44155577 - 44155671
Alignment:
| Q |
8 |
agtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatccacattatcctct |
102 |
Q |
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| T |
44155577 |
agtgcagtttatctctatcgagtacattctcacaaatgtgtcattagccaccatcatcagtgttctcactactctcaccatccacattatcctct |
44155671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Complemental strand, 44146241 - 44146211
Alignment:
| Q |
156 |
caatgatttatcttgacaaattcattgcaac |
186 |
Q |
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| T |
44146241 |
caatgatttatcttgacaaattcattgcaac |
44146211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 44155830 - 44155860
Alignment:
| Q |
156 |
caatgatttatcttgacaaattcattgcaac |
186 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44155830 |
caatgatttatcttgacaaattcattgcaac |
44155860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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