View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_165 (Length: 229)

Name: NF1773_low_165
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_165
NF1773_low_165
[»] chr6 (4 HSPs)
chr6 (33-229)||(33823389-33823585)
chr6 (165-223)||(10400166-10400224)
chr6 (1-30)||(33823867-33823896)
chr6 (168-229)||(2548316-2548379)
[»] chr4 (6 HSPs)
chr4 (165-229)||(19422315-19422379)
chr4 (166-210)||(7730513-7730557)
chr4 (165-229)||(9843775-9843839)
chr4 (174-229)||(24160604-24160659)
chr4 (174-228)||(24091371-24091424)
chr4 (191-229)||(55994296-55994334)
[»] chr2 (2 HSPs)
chr2 (165-229)||(10150652-10150716)
chr2 (165-229)||(26484193-26484257)
[»] chr1 (2 HSPs)
chr1 (165-211)||(21516255-21516301)
chr1 (165-202)||(30815772-30815809)
[»] chr8 (3 HSPs)
chr8 (165-210)||(40279724-40279769)
chr8 (185-229)||(4558715-4558759)
chr8 (181-229)||(32181262-32181310)
[»] chr5 (3 HSPs)
chr5 (165-229)||(40499784-40499848)
chr5 (165-229)||(11095578-11095642)
chr5 (165-209)||(15985372-15985416)
[»] chr3 (4 HSPs)
chr3 (165-229)||(44237390-44237454)
chr3 (180-229)||(44488796-44488845)
chr3 (165-229)||(41159006-41159070)
chr3 (165-229)||(48528475-48528539)
[»] chr7 (5 HSPs)
chr7 (174-229)||(35536013-35536068)
chr7 (192-229)||(27481403-27481440)
chr7 (178-227)||(44348505-44348554)
chr7 (165-229)||(39539870-39539934)
chr7 (185-229)||(47528042-47528086)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 33823585 - 33823389
Alignment:
Q  33 tcttttcttaatgaatactcttgtttctctggtttggaattgagtaagaagggatatattattaacaacaattcaggaatgaccagtcagaattttcatt 132  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  33823585 tcttttcttaatgaatactcttgcttctctggtttggaattgagtaagaagggaaatattattaacaacaattcaggaatgaccagtcagaattttcatg 33823486  T
Q  133 gtatcctcattggtaaaatcaatttcaatcaggtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823485 gtatcctcattggtaaaatcaatttcaatcaggtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 33823389  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 10400166 - 10400224
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctattt 223  Q
    |||||||| |||||| |||||||  |||||| ||||||||||||||| |||||||||||    
T  10400166 gtttggataaacaacataattaagggcttatcatataaatgtttatgtataagctattt 10400224  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33823896 - 33823867
Alignment:
Q  1 ctactcacatacaagaagaaattcttatac 30  Q
    ||||||||||||||||||||||||||||||    
T  33823896 ctactcacatacaagaagaaattcttatac 33823867  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 2548379 - 2548316
Alignment:
Q  168 tggatcaacaacttaattaaacgcttattatataaa--tgtttatgcataagctatttctataa 229  Q
    ||||| || |||||||||||||| |||||||||| |  |||||||| ||||| |||||||||||    
T  2548379 tggataaataacttaattaaacgtttattatatataagtgtttatgtataagttatttctataa 2548316  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 19422315 - 19422379
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| |||| ||||||||| ||||||| ||||||||| ||||| ||||| |||||||||||    
T  19422315 gtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataa 19422379  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 7730513 - 7730557
Alignment:
Q  166 tttggatcaacaacttaattaaacgcttattatataaatgtttat 210  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||    
T  7730513 tttggataaacaacttaattaagcacttattatataaatgtttat 7730557  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 9843839 - 9843775
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| |||||||||| |||  |||||| |||||| || ||||| |||||||||||||||||    
T  9843839 gtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctatttctataa 9843775  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 24160659 - 24160604
Alignment:
Q  174 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||||||||||||||||| |||||| || ||||  ||||||| |||||||||    
T  24160659 aacaacttaattaaacgcttatcatataagtgcttataaataagctttttctataa 24160604  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 24091371 - 24091424
Alignment:
Q  174 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctata 228  Q
    |||||||||||||| | ||||| ||||||||| | ||||||||||||||||||||    
T  24091371 aacaacttaattaagcacttatcatataaatgct-atgcataagctatttctata 24091424  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 55994334 - 55994296
Alignment:
Q  191 cttattatataaatgtttatgcataagctatttctataa 229  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  55994334 cttattatataaatgcttatgtataagctatttctataa 55994296  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 10150652 - 10150716
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||| ||| |||||||||||||| | |||||||||||| |||||||| ||||| |||||||||||    
T  10150652 gtttagataaacaacttaattaagcacttattatataagtgtttatgtataagttatttctataa 10150716  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 26484257 - 26484193
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| |||||||||||||| |  |||| |||||| || ||||| |||||||||||||||||    
T  26484257 gtttggataaacaacttaattaatcatttatcatataagtgcttatggataagctatttctataa 26484193  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 21516255 - 21516301
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatg 211  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||    
T  21516255 gtttggataaacaacttaattaaacgcttataacataaatgtttatg 21516301  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 30815809 - 30815772
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataa 202  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  30815809 gtttggatcaacaacttaattaagcgcttatcatataa 30815772  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 40279769 - 40279724
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttat 210  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||    
T  40279769 gtttggatcaacaatttaattaagcgcttataatataaatgtttat 40279724  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 4558715 - 4558759
Alignment:
Q  185 taaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||| ||||||| ||| |||||||| |||||||||||||||||    
T  4558715 taaacgtttattatgtaagtgtttatgtataagctatttctataa 4558759  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 32181262 - 32181310
Alignment:
Q  181 taattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||  |||||||  ||||||||||||| |||||||||||||||||    
T  32181262 taattaagtgcttattgaataaatgtttatgtataagctatttctataa 32181310  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 40499848 - 40499784
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| ||||||||||||||| |||||| |||||| || ||||| | ||| |||||||||||    
T  40499848 gtttggataaacaacttaattaaaagcttatcatataagtgcttatgtacaagttatttctataa 40499784  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 11095642 - 11095578
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| |||||||||| ||||| ||||  |||||| || ||||| |||| ||||||||||||    
T  11095642 gtttggataaacaacttaactaaacacttaccatataagtgattatgtataaactatttctataa 11095578  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 15985416 - 15985372
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgttta 209  Q
    |||||||||||||||||||||||  || ||| |||||||||||||    
T  15985416 gtttggatcaacaacttaattaagagcatatcatataaatgttta 15985372  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 44237390 - 44237454
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| ||||||||||||||  |||| | || |||||| ||||||||||||||||| |||||    
T  44237390 gtttggataaacaacttaattaagggcttctcatctaaatgcttatgcataagctatttttataa 44237454  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 44488796 - 44488845
Alignment:
Q  180 ttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| |||||||| ||||  |||||||| |||||||||||||||||    
T  44488796 ttaattaagcgcttattgtataggtgtttatgtataagctatttctataa 44488845  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 41159006 - 41159070
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| | ||||||||||||||||||||  ||||| || ||||| ||||| |||| ||||||    
T  41159006 gtttggataaccaacttaattaaacgcttatcgtataagtgcttatgtataagttattcctataa 41159070  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 48528475 - 48528539
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| ||||||| ||||||  |||||| |||||| |  ||||| |||||||||||||||||    
T  48528475 gtttggataaacaactgaattaagagcttatcatataagtacttatgtataagctatttctataa 48528539  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 35536013 - 35536068
Alignment:
Q  174 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||||||| | ||||||| ||||||| | ||||| |||||||||||||||||    
T  35536013 aacaacttaattgagcgcttatcatataaaggcttatgtataagctatttctataa 35536068  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 27481440 - 27481403
Alignment:
Q  192 ttattatataaatgtttatgcataagctatttctataa 229  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  27481440 ttattatataagtgtttatgtataagctatttctataa 27481403  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 44348505 - 44348554
Alignment:
Q  178 acttaattaaacgcttattatataaatgtttatgcataagctatttctat 227  Q
    |||||||||| |||||||||| ||| |||||| | |||||||||||||||    
T  44348505 acttaattaatcgcttattatgtaagtgtttaagtataagctatttctat 44348554  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 39539934 - 39539870
Alignment:
Q  165 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    |||||||| ||||||||||||||  |||||| |||||| || || || |||||||||||| ||||    
T  39539934 gtttggataaacaacttaattaagtgcttatcatataactgcttttgtataagctatttcgataa 39539870  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 47528086 - 47528042
Alignment:
Q  185 taaacgcttattatataaatgtttatgcataagctatttctataa 229  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||    
T  47528086 taaacacttattatacaagtgtttatgtataagctatttctataa 47528042  T

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