View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_18 (Length: 585)
Name: NF1773_low_18
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Complemental strand, 49004946 - 49004388
Alignment:
| Q |
20 |
gcaactacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49004946 |
gcaactacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggag |
49004847 |
T |
|
| Q |
120 |
ttctttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49004846 |
ttctttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaat |
49004747 |
T |
|
| Q |
220 |
atttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004746 |
atttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagca |
49004647 |
T |
|
| Q |
320 |
ttgttttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004646 |
ttgttttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaa |
49004547 |
T |
|
| Q |
420 |
acagtgtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaac |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49004546 |
acagtgtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattcagctccatttcttcagacccaac |
49004447 |
T |
|
| Q |
520 |
ttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctc |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004446 |
ttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctc |
49004388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 24 - 578
Target Start/End: Complemental strand, 38160965 - 38160411
Alignment:
| Q |
24 |
ctacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttct |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38160965 |
ctacattgactaatcatttcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttct |
38160866 |
T |
|
| Q |
124 |
ttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatattt |
223 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||||||||||| |
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| T |
38160865 |
ttgatttcttcctgccatttttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatatta |
38160766 |
T |
|
| Q |
224 |
aaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcgttgt |
323 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38160765 |
aaagtgaaagatagtttcagctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgcatagctccttaagcattgt |
38160666 |
T |
|
| Q |
324 |
tttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaaacag |
423 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38160665 |
tttccctgattccaagagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtatgatttcaagcttcaaacag |
38160566 |
T |
|
| Q |
424 |
tgtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttgg |
523 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||| |
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| T |
38160565 |
tgtgtaggtgtaactttatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaacattgagttccatttcctcagacccaatttgg |
38160466 |
T |
|
| Q |
524 |
ttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctc |
578 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
38160465 |
ttagtctcaaatccttcctcctgtacaagcacaatctgtgattctgcttcatctc |
38160411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 25 - 397
Target Start/End: Complemental strand, 38117138 - 38116767
Alignment:
| Q |
25 |
tacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117138 |
tacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
38117039 |
T |
|
| Q |
125 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatattta |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38117038 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt- |
38116940 |
T |
|
| Q |
225 |
aagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcgttgtt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
38116939 |
aagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgtt |
38116840 |
T |
|
| Q |
325 |
ttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatct |
397 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38116839 |
ttccctgattccaagagctcagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 425 - 578
Target Start/End: Complemental strand, 38116760 - 38116607
Alignment:
| Q |
425 |
gtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
524 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116760 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
38116661 |
T |
|
| Q |
525 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctc |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38116660 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctc |
38116607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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