View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_2 (Length: 843)
Name: NF1773_low_2
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 143 - 827
Target Start/End: Complemental strand, 41403686 - 41403011
Alignment:
| Q |
143 |
gacaatcatcaacaatttgaataatattgatcattataaaaaccttatttctcccttnnnnnnngcttgttttaatcttatttaatacaaatattttatt |
242 |
Q |
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| T |
41403686 |
gacaatcatcaacaatatgaataatattgatcattataaaaaccttatttttcccttaaaaaaagcttgttttaatcttatttaatacaaatattttatt |
41403587 |
T |
|
| Q |
243 |
ccatttttatctacgattaaataaaatataaaatagaatagacgaaaatgtttgcactcgtctttccgtttaaaatataaataacttaagttatctaaat |
342 |
Q |
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| T |
41403586 |
ccatttttatctacgattaaataaaatataaaatagaatagacgaaaatgtttgcactcgtctttccgtttaaaatataaataacttaagttatctaaat |
41403487 |
T |
|
| Q |
343 |
aattaggcattatgacgatcaattcggcgtgtctaccaaatcatctacttcagcttggtgtgttgggcagcttctnnnnnnntgattagttattcgcttg |
442 |
Q |
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| T |
41403486 |
aattaggcattattacgatcaattcggcgtgtctaccagatcatttacttcagttcggcgtgttgggaagcttctaaaaaaatgatcagttattcgcttg |
41403387 |
T |
|
| Q |
443 |
atttggatgtcaaacatgtgggttatatgacgagagaaagatgctcgatttttccagtggaaggaggatacattgcaacatttattatttgataaaatta |
542 |
Q |
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| T |
41403386 |
attt-gatgtcaaacatgtgggttatatgacgagagaaaaatgctcgatttttccagtagaaggaggatacattgcaacat---ttatttgataaaatta |
41403291 |
T |
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| Q |
543 |
aactgcaaactttttgatggttgaaggtgaaataacttaattttgcttttcaatatcatatgtgatagcttaatcccctaattttgcttgttgtgtggtg |
642 |
Q |
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| T |
41403290 |
agctgcaaactttttggtggttgaaggtgaaataaattaattttgcttttcaatatcatatgtgatagcttaatcccc---ttttgcttgttgtgtggtg |
41403194 |
T |
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| Q |
643 |
ctttgtaacgatcgtttttggctcttcattcttccgtgttattgttacttttgatgcaactcattcttcttttccttggnnnnnnnnnatgtcccttttt |
742 |
Q |
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| T |
41403193 |
ctttgaaacgatcgtttttggcttttcattcttccgtgttattgtta-ttttgatgcaactcattcttcttttccttggtttttttttatgacccttttt |
41403095 |
T |
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| Q |
743 |
gtgtttggaagacaaggttgttcggtttctataatttattttagcttnnnnnnntatgaattataactacttttagcgtacatgg |
827 |
Q |
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| T |
41403094 |
gtgtttggaagacaaggttgttcggtttctataatttattttagcttaaaaaaa-aagaattataactacttttagcgtacatgg |
41403011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41403827 - 41403780
Alignment:
| Q |
1 |
cgggatgcatcattttgaactcagattttctcattttcaattttacccc |
49 |
Q |
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| T |
41403827 |
cgggatgcatcattttgaactc-gattttctcattttcaattttacccc |
41403780 |
T |
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