View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_20 (Length: 579)
Name: NF1773_low_20
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 37783976 - 37784306
Alignment:
| Q |
8 |
tattccaaggaactttcgcatcacccatgcgaagctttttcttcgattgcgactcctgtttgtttttctaatatttgatgacttttctcttagacaaatt |
107 |
Q |
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| T |
37783976 |
tattccaaggaagtttcgcatcacccatgcgaagctttttcttcgattgcgactcctgtttgtttttctaatatttgatgacttttctcttagacacatt |
37784075 |
T |
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| Q |
108 |
acttagagcaaattgcacccacttttgactaaataacaaacacaccccctactttagtattaaaacaaacactaaccacccttatattctagaaaatagc |
207 |
Q |
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| T |
37784076 |
acttagagcaaattgcacccacttttgactaaataacaaacacaccccctactttagtattaaaacaaccactaaccacccttatattctagaaaatagc |
37784175 |
T |
|
| Q |
208 |
gaatgaccattggctaaaccttttttgagaatgggatttacatgtgcaattgatttagaaatagaacgaacttacacaaattctgaatactgattcatga |
307 |
Q |
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| T |
37784176 |
gaatgaccattggctaaaccttttttgagaatgggatttacatgtgcaattgatttagaaatagaacgaacttacacaaattctgaatacagattcatga |
37784275 |
T |
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| Q |
308 |
aatagaatgaacctaaacaatcacaataaat |
338 |
Q |
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| T |
37784276 |
aatagaatgaacctacacaatcacaataaat |
37784306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 402 - 577
Target Start/End: Original strand, 37784370 - 37784547
Alignment:
| Q |
402 |
gctcataacaatgtgagggaaagtgaga--gttaacagagatttaatggtgttaagatggaagagaggtgtttgttaatttgatactaaaataagggagg |
499 |
Q |
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| T |
37784370 |
gctcataacaatgtgagggaaagtgagagagttaacagagatttaatggtgttaagatggaagggaggagtttgttaatttgatactaaaataagggagg |
37784469 |
T |
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| Q |
500 |
ttagtgtctggtttgaaattagagggggtgtttatgttatttaagtcaaccttagaggaggttagtataatctaccca |
577 |
Q |
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| T |
37784470 |
ttagtgtctggtttgaaattagagtgggtgtttatgttatttaagtcaaccttaggggaggttagtataatttaccca |
37784547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 2758461 - 2758513
Alignment:
| Q |
492 |
aagggaggttagtgtctggtttgaaattagagggggtgtttatgttatttaag |
544 |
Q |
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||||||||||||||| | |||| |||||||||||| |||| ||||||||||| |
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| T |
2758461 |
aagggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaag |
2758513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 26179622 - 26179674
Alignment:
| Q |
492 |
aagggaggttagtgtctggtttgaaattagagggggtgtttatgttatttaag |
544 |
Q |
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| T |
26179622 |
aagggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaag |
26179674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 565
Target Start/End: Complemental strand, 11768538 - 11768411
Alignment:
| Q |
440 |
atttaatggtgttaagatggaagagaggtgtttgtta--atttgatactaaaataagggaggttagtgtctggtttgaaattagagggggtgtttatgtt |
537 |
Q |
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||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||| || ||| ||| |||||||| ||| |||| |
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| T |
11768538 |
atttaatggtgttaagatggaagggaggtgtgtgtgtccatttgataacaaaataagggaggttagtgtttgatttaaaactagaggggagttttgtgtt |
11768439 |
T |
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| Q |
538 |
atttaagtcaaccttagaggaggttagt |
565 |
Q |
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| T |
11768438 |
atttaagacaaccttaggggaggttagt |
11768411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 39985350 - 39985467
Alignment:
| Q |
427 |
agagttaacagagatttaatggtgttaagatggaagagaggtgtttgttaatttgatactaaaa-taagggaggttagtgtctggtttgaaattagaggg |
525 |
Q |
| |
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||||||||| | |||| || |||||||| |||||| | ||||||||| ||||||||| |||| ||||||||||| |||| | |||| ||| || |||| |
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| T |
39985350 |
agagttaacggtgattaaacggtgttaaagtggaagggtggtgtttgtcaatttgataaaaaaaataagggaggtttgtgtttagtttaaaactaaaggg |
39985449 |
T |
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| Q |
526 |
ggtgtttatgttatttaa |
543 |
Q |
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| T |
39985450 |
ggtgtttatgctatttaa |
39985467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 565
Target Start/End: Complemental strand, 36073924 - 36073798
Alignment:
| Q |
440 |
atttaatggtgttaagatggaagagaggtgtttgttaatttgatactaaaataagggaggttagtgtctggtttgaaattagaggg-ggtgtttatgtta |
538 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||| || ||| ||| ||||||| || ||| ||||| |
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| T |
36073924 |
atttaatggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgtta |
36073825 |
T |
|
| Q |
539 |
tttaagtcaaccttagaggaggttagt |
565 |
Q |
| |
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|||||| ||| ||| |||||||||| |
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| T |
36073824 |
tttaagacaattttaagggaggttagt |
36073798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 11960229 - 11960113
Alignment:
| Q |
427 |
agagttaacagagatttaatggtgttaagatggaagagaggtgtttgttaatttgatactaaaataagggaggttagtgtctggtttgaaattagagggg |
526 |
Q |
| |
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||||||||| | |||| || |||||||| |||||| | ||||||| | ||||||||| ||||||||||||||| |||| | |||| ||| |||||||| |
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| T |
11960229 |
agagttaacggtgattaaacggtgttaaagtggaagggtggtgtttttcaatttgataacaaaataagggaggtttgtgtttagtttaaaactagagggg |
11960130 |
T |
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| Q |
527 |
gtgtttatgttatttaa |
543 |
Q |
| |
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| T |
11960129 |
gtgtttgtgctatttaa |
11960113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 553
Target Start/End: Original strand, 30714 - 30856
Alignment:
| Q |
413 |
tgtgagggaaagtgaga--gttaacagagatttaatggtgttaagatggaagagaggtgtttgttaatttgatactaaaataagggaggttagtgtctgg |
510 |
Q |
| |
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|||||| |||||||||| | |||| | |||||||| |||||||| | |||| || || ||||| ||||||||| ||||||||||||||||||| | | |
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| T |
30714 |
tgtgagtgaaagtgagaaagataacggtgatttaatagtgttaaggttgaagggaagtatttgtcaatttgataactaaataagggaggttagtgtttag |
30813 |
T |
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| Q |
511 |
tttgaaattagagggggtgtttatgttatttaagtcaacctta |
553 |
Q |
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| T |
30814 |
tttaaaactaaagggggtctttttgttatttaagaaaacctta |
30856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 19986871 - 19986946
Alignment:
| Q |
468 |
tgtttgttaatttgatactaaaataagggaggttagtgtctggtttgaaattagagggggtgtttatgttatttaa |
543 |
Q |
| |
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||||||||||||| ||| |||||||||||||||| || | | |||| ||| |||||| ||||||| || ||||||| |
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|
| T |
19986871 |
tgtttgttaatttaataataaaataagggaggtttgtatttagtttaaaactagaggaggtgtttgtgctatttaa |
19986946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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