View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_21 (Length: 579)
Name: NF1773_low_21
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 7 - 579
Target Start/End: Original strand, 40221407 - 40221979
Alignment:
| Q |
7 |
agcagaacctgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactggtctatggtcagagaattttgactctcctctaacatac |
106 |
Q |
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| T |
40221407 |
agcagaacgtgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactggtctatggtcagagaattttgactctcctctaacatac |
40221506 |
T |
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| Q |
107 |
attttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaatattaattaaaagatatcaaattttaatagctttcgta |
206 |
Q |
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| T |
40221507 |
attttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaatattaattaaaagatatcaaattttaatagctttcgta |
40221606 |
T |
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| Q |
207 |
atgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttgatttgcaagtttgagcaacatattggtcagaattcatcaagtatt |
306 |
Q |
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| T |
40221607 |
atgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttgatttgcaagtttgagcaacatattggtcagaattcatcaagtatt |
40221706 |
T |
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| Q |
307 |
tgtaagtaggagcaaagtatatgctcccttcattccaaccttcaaatattcgtccagcattctactccatccttagttgatctttctctagtaacgcctt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40221707 |
tgtaagtaggagcaaagtatatgctcccttcattccaaccttcaaatattcgtccagcattctgctccatccttagttgatctttctctagtaacgcctt |
40221806 |
T |
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| Q |
407 |
caagttattattttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgttactgcacatataccaa |
506 |
Q |
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| T |
40221807 |
caagttattgttttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgttactgcacatataccaa |
40221906 |
T |
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| Q |
507 |
attaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttct |
579 |
Q |
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| T |
40221907 |
attaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttct |
40221979 |
T |
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