View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_22 (Length: 578)

Name: NF1773_low_22
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_22
NF1773_low_22
[»] scaffold0201 (3 HSPs)
scaffold0201 (109-344)||(21178-21411)
scaffold0201 (390-557)||(21566-21735)
scaffold0201 (344-394)||(21495-21545)
[»] chr1 (29 HSPs)
chr1 (105-344)||(41873803-41874040)
chr1 (390-557)||(41873486-41873655)
chr1 (413-557)||(14471281-14471427)
chr1 (112-269)||(14477699-14477853)
chr1 (411-510)||(27557265-27557364)
chr1 (112-269)||(14470910-14471064)
chr1 (112-249)||(15072718-15072852)
chr1 (112-251)||(35943373-35943509)
chr1 (343-394)||(41873676-41873727)
chr1 (112-239)||(23091405-23091530)
chr1 (133-253)||(46467221-46467338)
chr1 (112-234)||(16123341-16123460)
chr1 (178-269)||(48096940-48097031)
chr1 (178-236)||(15746707-15746765)
chr1 (105-170)||(45585013-45585078)
chr1 (216-269)||(46468627-46468680)
chr1 (112-169)||(50444703-50444760)
chr1 (112-168)||(52628879-52628935)
chr1 (179-234)||(10711906-10711961)
chr1 (110-169)||(27814344-27814403)
chr1 (194-269)||(46110414-46110489)
chr1 (177-236)||(48527650-48527709)
chr1 (193-272)||(52078049-52078128)
chr1 (178-236)||(3617438-3617496)
chr1 (179-236)||(9226156-9226213)
chr1 (194-259)||(16963966-16964031)
chr1 (109-169)||(15071393-15071453)
chr1 (193-269)||(18821647-18821723)
chr1 (54-86)||(41874059-41874091)
[»] chr4 (41 HSPs)
chr4 (390-557)||(42809245-42809414)
chr4 (393-510)||(45536044-45536161)
chr4 (393-510)||(23103011-23103128)
chr4 (397-510)||(49343029-49343142)
chr4 (180-344)||(4714139-4714305)
chr4 (179-269)||(53435661-53435751)
chr4 (178-269)||(13166677-13166768)
chr4 (144-269)||(13165581-13165703)
chr4 (112-297)||(49342673-49342856)
chr4 (112-269)||(6348209-6348362)
chr4 (143-269)||(49343917-49344040)
chr4 (179-269)||(53432180-53432270)
chr4 (178-272)||(56085464-56085558)
chr4 (112-169)||(1188897-1188954)
chr4 (106-269)||(1794459-1794621)
chr4 (112-169)||(4129047-4129104)
chr4 (105-169)||(1587229-1587293)
chr4 (109-169)||(37884282-37884342)
chr4 (178-269)||(40723344-40723435)
chr4 (112-170)||(31965889-31965947)
chr4 (112-170)||(42871149-42871207)
chr4 (109-171)||(42872302-42872364)
chr4 (112-169)||(1831268-1831325)
chr4 (112-257)||(42810123-42810265)
chr4 (196-272)||(7707725-7707801)
chr4 (196-272)||(52240013-52240089)
chr4 (112-170)||(390271-390329)
chr4 (112-170)||(2310977-2311035)
chr4 (105-167)||(24426386-24426448)
chr4 (441-511)||(34742778-34742848)
chr4 (185-235)||(36845534-36845584)
chr4 (112-169)||(393643-393700)
chr4 (112-169)||(10167479-10167536)
chr4 (176-257)||(22069350-22069431)
chr4 (177-253)||(33231505-33231582)
chr4 (112-169)||(40792805-40792862)
chr4 (353-394)||(42809183-42809224)
chr4 (196-236)||(11968647-11968687)
chr4 (179-270)||(27850844-27850938)
chr4 (112-168)||(37882888-37882944)
chr4 (105-169)||(44503684-44503747)
[»] chr7 (28 HSPs)
chr7 (397-510)||(4299646-4299759)
chr7 (400-510)||(22114732-22114842)
chr7 (400-510)||(40509302-40509412)
chr7 (112-258)||(40509653-40509796)
chr7 (112-269)||(40508432-40508586)
chr7 (112-258)||(22115083-22115226)
chr7 (112-297)||(4299927-4300110)
chr7 (178-269)||(3413649-3413740)
chr7 (109-272)||(32255040-32255202)
chr7 (134-269)||(4298789-4298921)
chr7 (194-272)||(47454469-47454547)
chr7 (109-169)||(6173455-6173515)
chr7 (179-272)||(11502325-11502421)
chr7 (178-224)||(33779040-33779086)
chr7 (178-236)||(46201248-46201306)
chr7 (178-271)||(47060382-47060475)
chr7 (179-236)||(2414863-2414920)
chr7 (196-269)||(40811456-40811529)
chr7 (105-170)||(45454085-45454150)
chr7 (178-224)||(15992252-15992298)
chr7 (109-167)||(32256402-32256460)
chr7 (112-170)||(33096923-33096981)
chr7 (179-269)||(35295817-35295907)
chr7 (441-511)||(43314483-43314553)
chr7 (112-170)||(43460827-43460885)
chr7 (112-170)||(47059162-47059220)
chr7 (112-168)||(30333339-30333395)
chr7 (112-168)||(45455378-45455434)
[»] chr3 (18 HSPs)
chr3 (393-503)||(44602076-44602186)
chr3 (112-237)||(53420370-53420493)
chr3 (109-234)||(3208535-3208658)
chr3 (178-269)||(42684993-42685084)
chr3 (178-272)||(10338855-10338949)
chr3 (113-171)||(12106629-12106687)
chr3 (112-169)||(18197201-18197258)
chr3 (196-272)||(38242420-38242496)
chr3 (105-165)||(40244234-40244294)
chr3 (110-169)||(38247481-38247540)
chr3 (441-511)||(21530588-21530658)
chr3 (441-511)||(35166549-35166619)
chr3 (112-204)||(40364373-40364462)
chr3 (179-236)||(48083345-48083402)
chr3 (109-272)||(53194776-53194935)
chr3 (112-169)||(53622716-53622773)
chr3 (180-236)||(10301053-10301109)
chr3 (208-280)||(27841606-27841678)
[»] chr2 (11 HSPs)
chr2 (112-234)||(43033136-43033254)
chr2 (106-236)||(43034411-43034539)
chr2 (179-269)||(34513461-34513551)
chr2 (178-253)||(34464085-34464161)
chr2 (109-169)||(28562814-28562874)
chr2 (178-257)||(34467623-34467702)
chr2 (178-280)||(29219501-29219606)
chr2 (178-280)||(29332800-29332905)
chr2 (112-170)||(11317372-11317430)
chr2 (178-224)||(30749278-30749323)
chr2 (196-236)||(11317308-11317348)
[»] chr5 (18 HSPs)
chr5 (144-269)||(33173867-33173990)
chr5 (178-344)||(33173791-33173959)
chr5 (178-269)||(1102735-1102826)
chr5 (176-251)||(22308725-22308800)
chr5 (112-269)||(325094-325247)
chr5 (109-203)||(22049111-22049201)
chr5 (112-236)||(39603907-39604030)
chr5 (112-170)||(22047786-22047844)
chr5 (179-236)||(4127194-4127251)
chr5 (109-146)||(34898979-34899016)
chr5 (179-262)||(35081352-35081435)
chr5 (179-272)||(30859075-30859171)
chr5 (115-169)||(34894206-34894260)
chr5 (112-170)||(39605473-39605531)
chr5 (179-236)||(1010306-1010363)
chr5 (179-236)||(8521372-8521429)
chr5 (109-170)||(15941324-15941385)
chr5 (229-269)||(26912251-26912291)
[»] scaffold0019 (1 HSPs)
scaffold0019 (178-269)||(63039-63130)
[»] scaffold0031 (2 HSPs)
scaffold0031 (112-236)||(124023-124143)
scaffold0031 (112-251)||(125157-125295)
[»] chr8 (14 HSPs)
chr8 (106-253)||(42872114-42872257)
chr8 (180-272)||(38696427-38696519)
chr8 (180-269)||(14840807-14840896)
chr8 (112-234)||(8571559-8571679)
chr8 (178-236)||(10669386-10669444)
chr8 (178-236)||(24192604-24192662)
chr8 (177-269)||(22551122-22551214)
chr8 (112-171)||(26696586-26696645)
chr8 (226-272)||(7486239-7486285)
chr8 (441-511)||(17594454-17594524)
chr8 (112-170)||(32798536-32798594)
chr8 (109-170)||(30787604-30787665)
chr8 (179-236)||(42877736-42877793)
chr8 (178-266)||(17455164-17455252)
[»] chr6 (7 HSPs)
chr6 (178-251)||(32506952-32507025)
chr6 (178-269)||(32505785-32505876)
chr6 (178-236)||(12669840-12669898)
chr6 (112-165)||(34024073-34024126)
chr6 (110-170)||(6452336-6452396)
chr6 (109-171)||(6452514-6452576)
chr6 (310-343)||(32506854-32506887)
[»] scaffold2071 (1 HSPs)
scaffold2071 (177-269)||(589-681)
[»] scaffold1152 (1 HSPs)
scaffold1152 (112-167)||(2483-2538)
[»] scaffold0118 (1 HSPs)
scaffold0118 (179-272)||(43478-43574)
[»] scaffold0034 (1 HSPs)
scaffold0034 (109-171)||(108564-108626)
[»] scaffold0077 (1 HSPs)
scaffold0077 (112-169)||(52646-52703)
[»] scaffold0011 (1 HSPs)
scaffold0011 (179-236)||(127551-127608)


Alignment Details
Target: scaffold0201 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 109 - 344
Target Start/End: Original strand, 21178 - 21411
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatag 208  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||| |||||||   ||||||||||||||||||||||||| | |    
T  21178 cataattaataaaaagtaccttttgatcccttagtttttcctccgtttgccaaataaatcattcgttg---ttaagtttaaccacaaatgtctatggtgg 21274  T
Q  209 accaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagattaaatggaccat 307  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  21275 accaaccttcagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatctttaaataaaacacccaccattagattaaatggaccat 21374  T
Q  308 gattattttacaatgatccaacaacaactaccattgg 344  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21375 gattatcttacaatgatccaacaacaactaccattgg 21411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 390 - 557
Target Start/End: Original strand, 21566 - 21735
Alignment:
Q  390 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 489  Q
    |||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  21566 cccttctcggcgtttcactgtccaccatgtgccacgttcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaactaat 21665  T
Q  490 ttcatgaaaggaacaactttt-cgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccac 557  Q
    |||||||||||||||| |||| |||||||||        ||||||||||||||||||||||| |||||||    
T  21666 ttcatgaaaggaacaatttttccgtcgaccctttttttcctccgccgcgggaaggggcttttccggccac 21735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 21495 - 21545
Alignment:
Q  344 gtccgctccttcttcttcttttcacgtgtaagctccttcttcttctccctt 394  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  21495 gtccgctcctttttcttcttttcacgcgtaagctccttcttcttctccctt 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 9e-87; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 105 - 344
Target Start/End: Complemental strand, 41874040 - 41873803
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatg 204  Q
    ||||||||||||||||||||||  |||||| || |||| |||||| ||||||  ||||||||||||| ||||||   |||||||||||||||||||||||    
T  41874040 gtctcataattaataaaaagtatcttttggccctttagcttttcctccgtttaccaaataaatccttggttgtt---aagtttaaccacaaatgtctatg 41873944  T
Q  205 atagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagattaaatgga 303  Q
     | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41873943 gtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatctttaaataaaacacctaccattagattaaatgga 41873844  T
Q  304 ccatgattattttacaatgatccaacaacaactaccattgg 344  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  41873843 ccatgattatcttacaatgatccaacaacaactaccattgg 41873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 390 - 557
Target Start/End: Complemental strand, 41873655 - 41873486
Alignment:
Q  390 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||    
T  41873655 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccatattctttattctctcgacgagggctttccattggtccaactaat 41873556  T
Q  490 ttcatgaaaggaacaactttt-cgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccac 557  Q
    |||||||||||||||| |||| |||||||||        ||||||||||||| ||||||||| |||||||    
T  41873555 ttcatgaaaggaacaatttttccgtcgaccctttttttcctccgccgcgggatggggcttttccggccac 41873486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 413 - 557
Target Start/End: Original strand, 14471281 - 14471427
Alignment:
Q  413 accatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaac-ttttc 511  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||| |||||||||||| |||||    
T  14471281 accacgtgcactgatcggaaaaagtaagaccattttctttatcctctcgtctagggctttccattggtccaactaatttcacgaaaggaacaactttttc 14471380  T
Q  512 gtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccac 557  Q
    | ||||||        ||||||||||||||||||||||| |||||||    
T  14471381 gccgacccttttcttcctccgccgcgggaaggggcttttccggccac 14471427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 14477853 - 14477699
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  |||||| | ||||| | ||||||| ||||||||||||||| ||||   |||||||||   ||||||||||| |||| |    
T  14477853 aattaataaaacgtacgtttaagtccctcacttttttctccgtttgccaaataaatccttcgatgtt---aagtttaactctaaatgtctatggtagatc 14477757  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    || |||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  14477756 aatcttaagagttgtccaccatagacttcattaattttttaaattttaaccgtttgat 14477699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 510
Target Start/End: Complemental strand, 27557364 - 27557265
Alignment:
Q  411 ccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaactttt 510  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||| |||||    
T  27557364 ccaccacgtgcaccgatcgaaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttt 27557265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 14470910 - 14471064
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| ||||  ||  |||||| | |||||||  |||||| ||||||||||||||| ||||   |||||||||| |||| ||||||  | ||||    
T  14470910 aattaataaaacgtacggttaagtccctcactttttccttcgtttgccaaataaatccttcggtgtt---aagtttaaccccaaacgtctatagtggacc 14471006  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  14471007 aaccttaagagtggtccaccataaacttcattaattttttaaattttgaccgtttgat 14471064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 15072852 - 15072718
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||| | ||   |||||| ||||||| |||||||||||| | ||||    
T  15072852 aattaataaaacgtacattttggtcccttattttttcctccgtttgccaaataaatccat-gt--ctgttaactttaacctcaaatgtctatggtggacc 15072756  T
Q  212 aaccttaagagtgttccaccatagacttcattaatttt 249  Q
    ||||| ||||||| |||||| ||||||  |||||||||    
T  15072755 aacctaaagagtggtccaccgtagactctattaatttt 15072718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 35943509 - 35943373
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||||||||||||| | | |||||||  |||||| |||||||||||  | | | ||||||||||||||  ||||||||||| | ||||    
T  35943509 aattaataaaacgtacattttggtcc-tcactttttccttcgtttgccaaataaatcc--cctggctgttaagtttaaccctaaatgtctatggtggacc 35943413  T
Q  212 aaccttaagagtgttccaccatagacttcattaatttttt 251  Q
    ||||||||||||| |||||||||||| | ||||| |||||    
T  35943412 aaccttaagagtgatccaccatagaccttattaaattttt 35943373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 41873727 - 41873676
Alignment:
Q  343 ggtccgctccttcttcttcttttcacgtgtaagctccttcttcttctccctt 394  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41873727 ggtccgctccttcttcttcttttcacgcgtaagctccttcttcttctccctt 41873676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 23091405 - 23091530
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||||||| || | ||||| | ||||||| ||||||||||| | ||   |||||||||||| | |||||||||||| | ||||    
T  23091405 aattaataaaacgtacgttttggtcactcacttttttctccgtttgccaaataaatccctagtc--tgttaagtttaatctcaaatgtctatggtggacc 23091502  T
Q  212 aaccttaagagtgttccaccatagactt 239  Q
    ||| |||| |||| ||||||||||||||    
T  23091503 aactttaaaagtggtccaccatagactt 23091530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 46467221 - 46467338
Alignment:
Q  133 ggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccacca 232  Q
    ||||||| || ||| || ||||||||||||||||||| ||| ||||   ||||||||||| ||||||||||| | ||||||| |||| |||| ||||||     
T  46467221 ggtccctcaggtttgcctccgtttgtcaaataaatccctcgctgtt---aagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccg 46467317  T
Q  233 tagacttcattaattttttaa 253  Q
    ||||  | ||||| |||||||    
T  46467318 tagatgttattaaatttttaa 46467338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 16123341 - 16123460
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    |||||||||||   || |||| |||||| | ||||||  ||||||| ||||||||||| | ||||   |||||||||| | |||||||||||| ||||||    
T  16123341 aattaataaaattcacgttttagtccctcattttttcttccgtttgccaaataaatccctggttg---ttaagtttaatctcaaatgtctatggtagacc 16123437  T
Q  212 aaccttaagagtgttccaccata 234  Q
    ||| |||| |||| |||||||||    
T  16123438 aactttaaaagtgatccaccata 16123460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 48097031 - 48096940
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||||| || ||||||||    ||||||| ||||||| |||  ||||||||    
T  48097031 tgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatattaatcgtttgat 48096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 15746765 - 15746707
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||||||||||  |||||||||||| | |||||| |||||||||| |||||||||||    
T  15746765 tgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccataga 15746707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 45585078 - 45585013
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||| ||||||||||| |||| ||||||||| | | ||||||| ||||||| ||||||||||||    
T  45585078 gtctcacaattaataaaacgtaccttttggtccttcactttttcctccgtttgccaaataaatcct 45585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 46468680 - 46468627
Alignment:
Q  216 ttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||| | ||||||||||||||||||||| | |||||||| |||||||||    
T  46468680 ttaagagtggttcaccatagacttcattaatttataaaattttaaccgtttgat 46468627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 50444760 - 50444703
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||||||||||||||| | ||||||| ||| ||| |||||||||||    
T  50444760 aattaataaaacgtacattttggtccctcattttttcctccgattgccaaataaatcc 50444703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 52628935 - 52628879
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 168  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||    
T  52628935 aattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatc 52628879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 10711906 - 10711961
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccata 234  Q
    ||||| ||||||| ||||| |||||||||||||||||| ||||||| |||| ||||    
T  10711906 gttaactttaacctcaaatatctatgatagaccaacctaaagagtggtccatcata 10711961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 27814344 - 27814403
Alignment:
Q  110 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||||| |||| ||||||||||| | ||||||| | ||||| |||||||||||    
T  27814344 ataattaataaaacgtaccttttggtccctcattttttcctctgtttgccaaataaatcc 27814403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 46110414 - 46110489
Alignment:
Q  194 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||| |||||| | ||||||||||||||||| |||| | ||||| | ||||||||| | ||||||| |||||||||    
T  46110414 aaatatctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttgat 46110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 48527650 - 48527709
Alignment:
Q  177 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||||| ||||||  |||||||||||| | ||||||| ||||||||| |||||||||||    
T  48527650 ttgttaactttaactccaaatgtctatggtcgaccaactttaagagtggtccaccataga 48527709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 52078128 - 52078049
Alignment:
Q  193 caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    |||||||||||| |  |||||||||||||||| | |||||||||    ||||||| ||| ||||||| ||||||||||||    
T  52078128 caaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttgatttt 52078049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 3617496 - 3617438
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||| ||||||| |||||||||||| |  |||||||||||||||| ||||| |||||    
T  3617496 tgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccactataga 3617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 9226213 - 9226156
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| |||||||||||| | || ||||||||| |||| |||||||||||    
T  9226213 gttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccataga 9226156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 16963966 - 16964031
Alignment:
Q  194 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaatttta 259  Q
    |||||| |||||| |||||||||||| |||| |||| ||||||| | ||||||||| | |||||||    
T  16963966 aaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaatttta 16964031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 15071393 - 15071453
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||||| |||  ||||||||||| | ||||||| ||||||  |||||||||||    
T  15071393 cataattaataaaacgtatgttttggtccctcactttttcctccgtttaccaaataaatcc 15071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 18821723 - 18821647
Alignment:
Q  193 caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||| | ||| ||||||||||||| || |||| |||    |||||||||||||| |||| |||||||||    
T  18821723 caaatgtctatggtggactaaccttaagagtggtctaccaaagatcctattaattttttaaaatttaaccgtttgat 18821647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 41874091 - 41874059
Alignment:
Q  54 taggcttattagatacattggtccctcaattaa 86  Q
    |||||||||||||| ||||||||||||||||||    
T  41874091 taggcttattagatccattggtccctcaattaa 41874059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 390 - 557
Target Start/End: Original strand, 42809245 - 42809414
Alignment:
Q  390 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  42809245 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaactaat 42809344  T
Q  490 ttcatgaaaggaacaactttt-cgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccac 557  Q
    ||||||||||||||||||||| |||||||||        ||||||||||||||||||||||| |||||||    
T  42809345 ttcatgaaaggaacaacttttccgtcgaccctttttttcctccgccgcgggaaggggcttttccggccac 42809414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 393 - 510
Target Start/End: Complemental strand, 45536161 - 45536044
Alignment:
Q  393 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 492  Q
    |||||||||||||  || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||     
T  45536161 ttctcggcgtcgctttgaccaccacgtgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttt 45536062  T
Q  493 atgaaaggaacaactttt 510  Q
    | ||||||||||||||||    
T  45536061 acgaaaggaacaactttt 45536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 393 - 510
Target Start/End: Original strand, 23103011 - 23103128
Alignment:
Q  393 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 492  Q
    |||||||||||||  || ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  23103011 ttctcggcgtcgctttgaccaccacatgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttc 23103110  T
Q  493 atgaaaggaacaactttt 510  Q
    | |||||||||| |||||    
T  23103111 acgaaaggaacagctttt 23103128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 397 - 510
Target Start/End: Original strand, 49343029 - 49343142
Alignment:
Q  397 cggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatga 496  Q
    ||||||||| ||| | ||||  ||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||| ||    
T  49343029 cggcgtcgctctgccgaccacatgcaccgatcggaaaaagtaagaccattttctttatcctctcgacttgggctttccattggtccaactaatttcacga 49343128  T
Q  497 aaggaacaactttt 510  Q
    ||||||||||||||    
T  49343129 aaggaacaactttt 49343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 180 - 344
Target Start/End: Original strand, 4714139 - 4714305
Alignment:
Q  180 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttga--ttttaaata 277  Q
    |||||||||||  |||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||  |||| || |    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccatagacttcattaatattttaaattttaaccatttgatctttttaaaa 4714238  T
Q  278 aaacacctaccattagatta-aatggaccatgattattttacaatgatccaacaacaactaccattgg 344  Q
    ||| | ||||||||||||||  | |||| |   |||| ||||||||||||||||||||||||||||||    
T  4714239 aaaaagctaccattagattatgaaggacta-ctttatcttacaatgatccaacaacaactaccattgg 4714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 53435751 - 53435661
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  53435751 gttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccaccgtagacttcattaattttttaaattttaaccgtttgat 53435661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 13166768 - 13166677
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||||| |||||||||    
T  13166768 tgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccatagaattcattaatattttaaattttaaccgtttgat 13166677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 13165581 - 13165703
Alignment:
Q  144 ttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatt 243  Q
    |||||| |||||||||||||||||||||   ||||   |||||||||  ||||| |||||| | ||||||||||||||||| ||||||||||||||||||    
T  13165581 ttttcctccgtttgtcaaataaatccttgactgtt---aagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcatt 13165677  T
Q  244 aattttttaaattttagccgtttgat 269  Q
    |||| ||| ||||| | |||||||||    
T  13165678 aattattttaatttaaaccgtttgat 13165703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 297
Target Start/End: Original strand, 49342673 - 49342856
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  |||||| | ||||||| || ||||| ||||||||  |||   | |||||||||||||| |||| ||||||  | ||||    
T  49342673 aattaataaaatgtacgtttaagtccctcactttttcctccatttgttaaataaattattc---ggtgttaagtttaaccccaaacgtctatagtggacc 49342769  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagatta 297  Q
    |||||||| |||| ||||| ||| |||||||||||||||||||||||  ||||||||| ||| || |||  | ||||||||||||||    
T  49342770 aaccttaaaagtggtccactataaacttcattaattttttaaattttgaccgtttgatcttttaaaaaacaagctaccattagatta 49342856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 6348209 - 6348362
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| ||||||| ||| | ||||||| | ||||||||||||||| ||  | ||  ||||||||||||| |||||||||||| | ||||    
T  6348209 aattaataaaacgtaccttttggttcctcactttttcctctgtttgtcaaataaattct--gatg--gttaagtttaacctcaaatgtctatggtggacc 6348304  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||| |||||| ||||| | |||||| |||  ||||||| || ||||||    
T  6348305 aaccttaagagtggtccaccgtagaccttattaatatttctaattttaaccctttgat 6348362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 49344040 - 49343917
Alignment:
Q  143 tttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcat 242  Q
    ||||||| ||||||| |||||||||| |||| ||||   ||||||||||  || | |||||| | || ||| ||||| |||  |||||||||||||||||    
T  49344040 tttttcctccgtttgccaaataaatcattcgatgtt---aagtttaaccctaagtatctatggtggatcaatcttaaaagttgtccaccatagacttcat 49343944  T
Q  243 taattttttaaattttagccgtttgat 269  Q
    ||||||||||||||||| |||||||||    
T  49343943 taattttttaaattttaaccgtttgat 49343917  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 53432180 - 53432270
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||| |||||||||||| |  |||||| |||||||||   ||||||| || | ||||||||||| ||||||| |||||||||    
T  53432180 gttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttgat 53432270  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 56085464 - 56085558
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    |||||| ||||||| |||||||||||| | ||| ||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  56085464 tgttaactttaaccccaaatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 56085558  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 1188897 - 1188954
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||    
T  1188897 aattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 1188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 269
Target Start/End: Original strand, 1794459 - 1794621
Alignment:
Q  106 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt-cgttgttgttaagtttaaccacaaatg---tct 201  Q
    ||||| |||||||||||  ||| ||||| ||||| | ||||||| | ||||||||||||||||||  ||     ||||||||||| | ||||||   | |    
T  1794459 tctcacaattaataaaatataccttttgatccctcactttttcctctgtttgtcaaataaatcctaacg-----gttaagtttaatcccaaatgatgtat 1794553  T
Q  202 atgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||| | ||||||||||||||||| |||||||||||| | ||||| ||||| ||||| | |||||||||    
T  1794554 atggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 1794621  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 4129047 - 4129104
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||    
T  4129047 aattaataaaatgtacattttggtcccttacttttttctccgtttgccaaataaatcc 4129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 1587229 - 1587293
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    
T  1587229 gtctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc 1587293  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 37884342 - 37884282
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||||| |||| ||||||||| ||| ||||||| ||||||| |||||||||||    
T  37884342 cataattaataaaatgtaccttttggtcctttactttttcctccgtttgccaaataaatcc 37884282  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 40723344 - 40723435
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||||| || ||||||||    ||||||| ||||||| |||  ||||||||    
T  40723344 tgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatgttaatcgtttgat 40723435  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 31965889 - 31965947
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||| |||| |||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  31965889 aattaagaaaatgtacattttggtccctcactttttcctccgtttgccaaataaatcct 31965947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 42871149 - 42871207
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  42871149 aattaataaaacgtacgttttggtccctcactttttcctccgtttgccaaataaatcct 42871207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 42872364 - 42872302
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 171  Q
    |||||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||| |||||    
T  42872364 cataattaataaaatgtacgttttggtccctcactttttcctccgtttgccaaataattcctt 42872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 1831325 - 1831268
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||||||||||||||| | ||||||| || ||| ||||||||||||    
T  1831325 aattaataaaacgtacattttggtccctcattttttcctccatttttcaaataaatcc 1831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 257
Target Start/End: Complemental strand, 42810265 - 42810123
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaa-ccacaaatgtctatgatagac 210  Q
    ||||||||||| |||| |||  |||||| |  |||||| ||||||| |||||||||||    ||| |||||||||||| || || ||||||||| |  ||    
T  42810265 aattaataaaacgtacttttaagtccctcacattttcctccgtttgccaaataaatcc----ttggtgttaagtttaacccccagatgtctatggtgaac 42810170  T
Q  211 caaccttaagagtgttccaccatagacttcattaattttttaaattt 257  Q
    ||| |||||||||  |||||||||||| | ||||| ||||| |||||    
T  42810169 caatcttaagagtagtccaccatagaccttattaaattttttaattt 42810123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 7707725 - 7707801
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    |||||| || ||||||||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  7707725 atgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt 7707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 52240013 - 52240089
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||| | ||||||||||||||||| |||||||||||    |||||| |||| ||||| | ||||||||||||    
T  52240013 atgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatttt 52240089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 390271 - 390329
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| ||| |||||||||||| | || |||| ||||||| ||||||||||||    
T  390271 aattaataaaacgtatattttggtccctcatttcttcctccgtttgccaaataaatcct 390329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 2310977 - 2311035
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| |||| ||||||||||| || |||||| ||| ||| ||||||||||||    
T  2310977 aattaataaaacgtacgttttggtccctcagattttcctccgattgccaaataaatcct 2311035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 24426386 - 24426448
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 167  Q
    |||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||| ||||    
T  24426386 gtctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaaaaaat 24426448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 34742778 - 34742848
Alignment:
Q  441 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 511  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  34742778 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 34742848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 36845534 - 36845584
Alignment:
Q  185 tttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatag 235  Q
    |||||||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  36845534 tttaaccctaaatgtttatgatagaccaacattaagagtggtccaccatag 36845584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 393700 - 393643
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||||||  ||||||||||| | ||||| | ||||||| |||||||||||    
T  393700 aattaataaaaagtatcttttggtccctcacttttttctccgtttgccaaataaatcc 393643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 10167479 - 10167536
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||| | |||||| |||||| |  |||||| |||||||||||||||||||    
T  10167479 aattaataaaaattgcattttagtccctcatattttcctccgtttgtcaaataaatcc 10167536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 22069350 - 22069431
Alignment:
Q  176 gttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattt 257  Q
    |||||||| ||||||  |||||||||||| | ||| |||||||| |||| | |||||||||||  |||||| |||| |||||    
T  22069350 gttgttaactttaacttcaaatgtctatggtggacgaaccttaaaagtggttcaccatagactctattaatatttttaattt 22069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 33231505 - 33231582
Alignment:
Q  177 ttgttaagtttaacca-caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaa 253  Q
    |||||||||||||||  |||||||||||| | ||| |||||||  |||| ||||||||| |||  |||||||||||||    
T  33231505 ttgttaagtttaaccctcaaatgtctatggtggacaaaccttagaagtggtccaccataaactctattaattttttaa 33231582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 40792805 - 40792862
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||  ||||||||||||||| || |||| | ||||||| |||||||||||    
T  40792805 aattaataaaacatacattttggtccctcagatttttctccgtttgccaaataaatcc 40792862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 42809183 - 42809224
Alignment:
Q  353 ttcttcttcttttcacgtgtaagctccttcttcttctccctt 394  Q
    ||||||||||||||||   |||||||||||||||||||||||    
T  42809183 ttcttcttcttttcacacataagctccttcttcttctccctt 42809224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 11968647 - 11968687
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  11968647 atgtctatgatggaccaaccttaagagtggtccatcataga 11968687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 27850938 - 27850844
Alignment:
Q  179 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatt 270  Q
    ||||||||||||| ||||||   |||||| | |||||||||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||    
T  27850938 gttaagtttaacctcaaatgatgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgatt 27850844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 37882888 - 37882944
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 168  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| ||||||||||    
T  37882888 aattaataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 44503747 - 44503684
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||| ||||||||||  |||||||||||||||| | ||||||| | ||||| |||||||||||    
T  44503747 gtctcacaattaataaac-gtacattttggtccctcactttttcctctgtttgccaaataaatcc 44503684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 397 - 510
Target Start/End: Complemental strand, 4299759 - 4299646
Alignment:
Q  397 cggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatga 496  Q
    ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||    
T  4299759 cggcgtcgctctgccgaccacgtgcaccgatcggaataagtaagaccattttctttatcctctcgactagggctttccattggtccaactaatttcacga 4299660  T
Q  497 aaggaacaactttt 510  Q
    ||||||||||||||    
T  4299659 aaggaacaactttt 4299646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 22114842 - 22114732
Alignment:
Q  400 cgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaag 499  Q
    |||||| ||| | |||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||| |||||    
T  22114842 cgtcgctctgccgaccacgtgcaccgatcggaaaaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaag 22114743  T
Q  500 gaacaactttt 510  Q
    |||||||||||    
T  22114742 gaacaactttt 22114732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 40509412 - 40509302
Alignment:
Q  400 cgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaag 499  Q
    |||||| ||| | |||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||| |||||    
T  40509412 cgtcgctctgccgaccacgtgcaccgatcggaaaaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaag 40509313  T
Q  500 gaacaactttt 510  Q
    |||||||||||    
T  40509312 gaacaactttt 40509302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 40509796 - 40509653
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  || ||| | ||||||| ||||||  |||||||||| |||| ||||   |||||||||| |||||||||||  | ||||    
T  40509796 aattaataaaacgtacgtttaagttcctcactttttcctccgtttaccaaataaatcattcggtgtt---aagtttaaccccaaatgtctatagtggacc 40509700  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaatttt 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  40509699 aaccttaagagtggtccaccatagacttcattaattttttaaatttt 40509653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 40508432 - 40508586
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  |||||| | ||||||| ||||| | ||||||||||||||| ||||   |||||||| | |||||||||||| | || |    
T  40508432 aattaataaaacgtacgtttaagtccctcactttttcctccgttagccaaataaatccttcggtgtt---aagtttaatcccaaatgtctatggtggatc 40508528  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    || |||||||||  ||||||||||| |||||||||||||||||||||| |||||||||    
T  40508529 aatcttaagagttgtccaccatagatttcattaattttttaaattttaaccgtttgat 40508586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 22115226 - 22115083
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  || ||| | ||||||| |||||   |||||||||| |||| ||||   |||||||||| |||||||||||  | ||||    
T  22115226 aattaataaaacgtacgtttaagttcctcactttttcctccgttnaccaaataaatcnttcggtgtt---aagtttaaccccaaatgtctatagtggacc 22115130  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaatttt 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22115129 aaccttaagagtggtccaccatagacttcattaattttttaaatttt 22115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 4300110 - 4299927
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| |||  |||||| | ||||||| | ||||| |||||||||| |||| ||||   |||||||||| |||| ||||||  | || |    
T  4300110 aattaataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatctttcggtgtt---aagtttaaccccaaacgtctatagtggatc 4300014  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagatta 297  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||| ||| || |||  | ||||||||||||||    
T  4300013 aaccttaagagtggcccaccatagacttcattaattttttaaattttgaccgtttgatcttttaaaaaacaagctaccattagatta 4299927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 3413649 - 3413740
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||  || ||||||||| | || ||| |||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  3413649 tgttaagtttaacttcagatgtctatggtggatcaatcttaagagttgtccaccatagacttcattaattttttaaattttaaccgtttgat 3413740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 32255040 - 32255202
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaa---atgtctatga 205  Q
    |||||||||||||| |||||||||| ||||| | ||||||| ||||||| |||||||||||  ||  |  ||||||||||||| |||   |||| ||||     
T  32255040 cataattaataaaacgtacattttgatccctcactttttcctccgtttgccaaataaatcc--cgacg--gttaagtttaaccccaaatgatgtttatgg 32255135  T
Q  206 tagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    | ||||||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  32255136 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt 32255202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 4298789 - 4298921
Alignment:
Q  134 gtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccat 233  Q
    |||||| | ||||||| | ||||| |||||||||| ||   || ||||||||||||||  ||| || |||| | || ||| | |||||||  ||||||||    
T  4298789 gtccctcactttttcctctgtttgccaaataaatcatt---tgatgttaagtttaaccctaaacgtgtatggtggatcaatcctaagagttgtccaccat 4298885  T
Q  234 agacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||||||||||||||| |||||||||    
T  4298886 agacttcattaattttttaaattttaaccgtttgat 4298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 47454469 - 47454547
Alignment:
Q  194 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||||| ||||||||||||||||||| |||| | ||||| | ||||||||| | ||||||| ||||||||||||    
T  47454469 aaatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttgatttt 47454547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 6173515 - 6173455
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||    
T  6173515 cataattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 6173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 11502421 - 11502325
Alignment:
Q  179 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||||||| ||||||   |||||| ||||||||||||||||||| |||||||||||    | ||||| ||| ||||| ||||||||||||||    
T  11502421 gttaagtttaacctcaaatgatgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattttaatttcagccgtttgatttt 11502325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 33779086 - 33779040
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 224  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  33779086 tgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtg 33779040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 46201248 - 46201306
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||    
T  46201248 tgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccataga 46201306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 47060475 - 47060382
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattt 271  Q
    |||||||||||||  ||||||| |||| | |||||||||||||| |  |||||||||||| | ||||| |||||||| ||||  ||||||||||    
T  47060475 tgttaagtttaacaccaaatgtatatggtggaccaaccttaagaatagtccaccatagaccttattaaatttttaaaatttaatcgtttgattt 47060382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 2414863 - 2414920
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| ||||||||||| || |||||||||||| |||| |||||||||||    
T  2414863 gttaactttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccataga 2414920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 40811456 - 40811529
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||| | ||||||||||||||||| ||||||||||| |  |||||| |||| ||||| | |||||||||    
T  40811456 atgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttgat 40811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 45454085 - 45454150
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||||||||||  ||| |||| |||||| | ||||||| ||||||| ||||||||||||    
T  45454085 gtctcataattaataaaacatacgttttagtccctcactttttcctccgtttgccaaataaatcct 45454150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 15992252 - 15992298
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 224  Q
    |||||| ||||||| |||||||||||| | |||||||||||||||||    
T  15992252 tgttaactttaacctcaaatgtctatggtggaccaaccttaagagtg 15992298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 32256460 - 32256402
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 167  Q
    |||||||||||||| |||| ||||||||||| | ||||||| || |||| |||||||||    
T  32256460 cataattaataaaatgtaccttttggtccctcactttttcctccatttgccaaataaat 32256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 33096923 - 33096981
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  33096923 aattaataaaacttaccttttggtccctcactttttcctccgtttgccaaataaatcct 33096981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 35295817 - 35295907
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||| ||||||| ||||| ||| || | ||||||||||||||||| |||||||||||    ||||||| ||| ||||| | |||||||||    
T  35295817 gttaactttaaccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 35295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 43314553 - 43314483
Alignment:
Q  441 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 511  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  43314553 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 43314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 43460885 - 43460827
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| ||||||||| |||||| | ||||||| || |||| ||||||||||||    
T  43460885 aattaataaaacgtacattttagtccctcactttttcctccatttgccaaataaatcct 43460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 47059162 - 47059220
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| |||| ||||| ||||| | ||||||| ||||||| ||||||||||||    
T  47059162 aattaataaaatgtacgttttgatccctcactttttcctccgtttgccaaataaatcct 47059220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 30333339 - 30333395
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 168  Q
    ||||||||||| |||  ||||||||||| | ||||| | ||||||||||||||||||    
T  30333339 aattaataaaacgtatcttttggtccctcatttttttctccgtttgtcaaataaatc 30333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 45455434 - 45455378
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 168  Q
    ||||||||||| |||||||||| ||||| | ||||| | ||||||| ||||||||||    
T  45455434 aattaataaaacgtacattttgatccctcacttttttctccgtttgccaaataaatc 45455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 393 - 503
Target Start/End: Original strand, 44602076 - 44602186
Alignment:
Q  393 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 492  Q
    |||||||||||||  || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  44602076 ttctcggcgtcgctttgaccaccacgtgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttc 44602175  T
Q  493 atgaaaggaac 503  Q
    |  ||||||||    
T  44602176 acaaaaggaac 44602186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 53420370 - 53420493
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| ||||||||||| | ||||| | |||||| |||||||||||| | ||   | ||||||||||||||||||||||||| | ||||    
T  53420370 aattaataaaacgtacgttttggtccctcacttttttctccgtttatcaaataaatccctagtc--tattaagtttaaccacaaatgtctatggtggacc 53420467  T
Q  212 aaccttaagagtgttccaccatagac 237  Q
    ||| |||| |||| ||||||||||||    
T  53420468 aactttaaaagtgatccaccatagac 53420493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 3208535 - 3208658
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatg--tctatgat 206  Q
    |||||||||||||| |||| ||||| ||||||| ||||||| |||||||||||||||||||    ||   ||||||||||||| ||||||    |||| |    
T  3208535 cataattaataaaacgtacgttttgatcccttattttttcctccgtttgtcaaataaatcc----ttaccgttaagtttaaccccaaatgatattatggt 3208630  T
Q  207 agaccaaccttaagagtgttccaccata 234  Q
     ||||||||||||||||| |||||||||    
T  3208631 ggaccaaccttaagagtggtccaccata 3208658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 42684993 - 42685084
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||| |||||||||||| |  ||||| |||||||||| ||||||||| || | ||||| ||||| ||||| | |||||||||    
T  42684993 tgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttgat 42685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 10338855 - 10338949
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    |||||| ||||||| || |||||||| ||  |||||||||||||||| |||||||||||    ||||||| ||| ||||||| | ||||||||||    
T  10338855 tgttaactttaacctcagatgtctataatgaaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactgtttgatttt 10338949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 12106629 - 12106687
Alignment:
Q  113 attaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 171  Q
    |||||||||| |||||||||||||||| | ||||| | |||||| ||||||||||||||    
T  12106629 attaataaaacgtacattttggtccctcacttttttctccgtttatcaaataaatcctt 12106687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 18197201 - 18197258
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    
T  18197201 aattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatcc 18197258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 38242496 - 38242420
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||| | ||||||||||||||||| ||||||||| | |  ||||||| ||| ||||| | ||||||||||||    
T  38242496 atgtctatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttgatttt 38242420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 40244234 - 40244294
Alignment:
Q  105 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataa 165  Q
    |||||| ||||||||||| |||||||||||||||| |  |||||| ||||||| |||||||    
T  40244234 gtctcacaattaataaaacgtacattttggtccctcaaattttcctccgtttgccaaataa 40244294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 38247540 - 38247481
Alignment:
Q  110 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||| |||||||| |||||||||||| ||||||||||  ||||||||| |||| ||||||    
T  38247540 ataagtaataaaacgtacattttggttccttagttttcacaccgtttgccaaaaaaatcc 38247481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 21530588 - 21530658
Alignment:
Q  441 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 511  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  21530588 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 21530658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 35166549 - 35166619
Alignment:
Q  441 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 511  Q
    |||||||||||| ||| ||||| |||  |||||| ||||||||| | |||||| ||||||| |||||||||    
T  35166549 accattttctttttccactcgatgagagctttccgttggtccaattaatttcacgaaaggagcaacttttc 35166619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 40364373 - 40364462
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatg 204  Q
    ||||||||||| |||| |||  |||||| | ||||| | ||||||| ||||||||||||||   | ||||||||||||||  |||||||||||    
T  40364373 aattaataaaatgtacgtttaagtccctcatttttttctccgtttgccaaataaatccttc---ggtgttaagtttaacctaaaatgtctatg 40364462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 48083345 - 48083402
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| |||||||||||||||||||| |  || ||||||||||||| || ||||||||    
T  48083345 gttaactttaaccacaaatgtctatggtgcactaaccttaagagtggtctaccataga 48083402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 272
Target Start/End: Complemental strand, 53194935 - 53194776
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatag 208  Q
    |||||||||||||| |||| ||||||||||| | ||||||| |  |||| ||||||||||| | ||   |||||||||||||   ||||||||||| | |    
T  53194935 cataattaataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatccat-gt--ctgttaagtttaactcaaaatgtctatggtgg 53194839  T
Q  209 accaacctta-agagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||  || ||| ||| |  ||||||||||||||||||||||||||  |||||| || |||||||||    
T  53194838 actcacattataga-tagtccaccatagacttcattaatttttt-tattttaaccatttgatttt 53194776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 53622716 - 53622773
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    |||||||||||| || |||||| |||||||| |||||| ||||||| ||| |||||||    
T  53622716 aattaataaaaaatatattttgatcccttagattttcctccgtttgccaactaaatcc 53622773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 10301053 - 10301109
Alignment:
Q  180 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||| ||||||| ||||| |||||| |  |||||||||||||||| |||||||||||    
T  10301053 ttaactttaacctcaaatatctatggtgaaccaaccttaagagtgatccaccataga 10301109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 27841678 - 27841606
Alignment:
Q  208 gaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaaataaaa 280  Q
    ||||||||||||||||| |||||||||||    | ||||| ||| ||||||| | ||||||||||||| ||||    
T  27841678 gaccaaccttaagagtggtccaccatagatcctaataattattttaattttaactgtttgattttaaaaaaaa 27841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 43033136 - 43033254
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    | | |||||||||||||| |||||||||||| ||||||    
T  43033136 aattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc----tcgatgttaagtttaacctcaaatgtctatggtagacc 43033231  T
Q  212 aaccttaagagtgttccaccata 234  Q
    ||||||||||||| |||||||||    
T  43033232 aaccttaagagtggtccaccata 43033254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 43034539 - 43034411
Alignment:
Q  106 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaac--cacaaatgtctat 203  Q
    ||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||||| ||||   | |||||||||||||  | |||||||||||    
T  43034539 tctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgtcaaataaat-cttc---gctgttaagtttaacctctcaaatgtctat 43034444  T
Q  204 gatagaccaaccttaagagtgttccaccataga 236  Q
    | | || |||| ||||||||| |||||||||||    
T  43034443 ggtggatcaactttaagagtggtccaccataga 43034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 34513551 - 34513461
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||| |||||| ||||||| |||| | ||||||||||||||||| |||||||||||| | ||||||||||| ||||| | |||||||||    
T  34513551 gttaagcttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgat 34513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 34464085 - 34464161
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatta-attttttaa 253  Q
    |||||||||||||| |||||||||||  | ||||||||||||||||| |||||||||||| | |||| |||||||||    
T  34464085 tgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaa 34464161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 28562874 - 28562814
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||||||  ||| ||||||||||| | ||||||| |||||||||||||||||||    
T  28562874 cataattaataaaacataccttttggtccctcactttttcctccgtttgtcaaataaatcc 28562814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 34467623 - 34467702
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattt 257  Q
    |||| ||||||||  |||||||||||||| ||| ||||||||||||| ||||||||| || | ||||| ||||| |||||    
T  34467623 tgttgagtttaacttcaaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaattt 34467702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 29219501 - 29219606
Alignment:
Q  178 tgttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaa 274  Q
    |||||||||||||| ||||||   |||||| | |||||| ||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||||||    
T  29219501 tgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaa 29219600  T
Q  275 ataaaa 280  Q
    | ||||    
T  29219601 aaaaaa 29219606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 29332800 - 29332905
Alignment:
Q  178 tgttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaa 274  Q
    |||||||||||||| ||||||   |||||| | |||||| ||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||||||    
T  29332800 tgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaa 29332899  T
Q  275 ataaaa 280  Q
    | ||||    
T  29332900 aaaaaa 29332905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 11317430 - 11317372
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||||||||  || |||||||||||| | ||||||| ||||||| ||||||||||||    
T  11317430 aattaataaaacatatattttggtccctcaatttttcctccgtttggcaaataaatcct 11317372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 30749323 - 30749278
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 224  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||    
T  30749323 tgttaagtttaacctcaaatgtctatggta-accaaccttaagagtg 30749278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 11317348 - 11317308
Alignment:
Q  196 atgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||||||| ||||||||||||||||||| || ||||||||    
T  11317348 atgtctatggtagaccaaccttaagagtggtctaccataga 11317308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 33173990 - 33173867
Alignment:
Q  144 ttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatt 243  Q
    |||||| | ||||| ||||||||||||   | | |||||||||||||| |||||||||||| | ||||||||||||||||| || |||||||||||||||    
T  33173990 ttttcctctgtttgccaaataaatcct---tggctgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcatt 33173894  T
Q  244 aa-ttttttaaattttagccgtttgat 269  Q
    || |||||||||||||| |||||||||    
T  33173893 aatttttttaaattttaaccgtttgat 33173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 344
Target Start/End: Complemental strand, 33173959 - 33173791
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatttttt-aaattttagccgtttgat-tttaaa 275  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||| ||| ||    
T  33173959 tgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcattaatttttttaaattttaaccgtttgatcttttaa 33173860  T
Q  276 taaaacacctaccattagatta--aatggaccatgattattttacaatgatccaacaacaactaccattgg 344  Q
     ||||    |||| || ||||   |||| || |   |||| ||||||||||||||||||||||||||||||    
T  33173859 aaaaaaggttaccgttggattctgaatg-actact-ttatcttacaatgatccaacaacaactaccattgg 33173791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 1102735 - 1102826
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||  | ||||||| ||| ||||| | |||||||||    
T  1102735 tgttaactttaaccccaaatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgat 1102826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 22308800 - 22308725
Alignment:
Q  176 gttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatttttt 251  Q
    |||||||||||||||| |||||||||||| | |||| |||||||||||| |||||||||||| | ||||| |||||    
T  22308800 gttgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttt 22308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 325247 - 325094
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| |||||||||||  ||    |||||| ||||||   ||||||||||| | ||||    
T  325247 aattaataaaacgtaccttttggtccctcaagttttcctccgtttgccaaataaatcc--cgac--tgttaactttaactctaaatgtctatggtggacc 325152  T
Q  212 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||| |||| |||| | ||||| | ||||||||| | ||||||| |||||||||    
T  325151 aaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttgat 325094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 22049201 - 22049111
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctat 203  Q
    |||||||||||||| |||| ||||||||||| | ||||||| | ||||| |||||||||||     || |||||||||||||| |||||||||||    
T  22049201 cataattaataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatcc----ctgctgttaagtttaaccccaaatgtctat 22049111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 39603907 - 39604030
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatg---tctatgatag 208  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| |||||||||| |   |    ||||||||||||| ||||||   |||||| |||    
T  39603907 aattaataaaacgtacgttttggtccctcaaattttcctccgtttgccaaataaatcatgact----gttaagtttaaccccaaatgatgtctatggtag 39604002  T
Q  209 accaaccttaagagtgttccaccataga 236  Q
    ||||||||||| |||| |||||||||||    
T  39604003 accaaccttaaaagtgatccaccataga 39604030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 22047786 - 22047844
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  22047786 aattaataaaacgtacgttttggtccctcattttttcctccgtttgccaaataaatcct 22047844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 4127251 - 4127194
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||    
T  4127251 gttaactttaaccccaaatgtctatgatagatcaatcttaaaagtggtccaccataga 4127194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 34899016 - 34898979
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttt 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34899016 cataagtaataaaaagtacattttggtcccttagtttt 34898979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 35081435 - 35081352
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagcc 262  Q
    ||||| ||||||| |||||||||||  | || |||||||||||||  ||||||||| || | | ||||||||| ||||||||||    
T  35081435 gttaactttaacctcaaatgtctatagtggatcaaccttaagagttgtccaccataaaccttaataatttttttaattttagcc 35081352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 30859171 - 30859075
Alignment:
Q  179 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||||||| ||||||   |||||| | |||||| |||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  30859171 gttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 30859075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 34894206 - 34894260
Alignment:
Q  115 taataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||||| ||||||||||||||||||  | ||||||| |||| ||||||    
T  34894206 taataaaaagtaccttttggtcccttagttttgtctccgtttgccaaaaaaatcc 34894260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 39605531 - 39605473
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||||||||  ||| ||||||||||| || |||||| ||||||| ||||||||||||    
T  39605531 aattaataaaacatacgttttggtccctcagattttcctccgtttgccaaataaatcct 39605473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 1010363 - 1010306
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| ||||||| |||| | ||||||||||||||||| ||| |||||||    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccataga 1010306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 8521372 - 8521429
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| ||||||| |||| | |||||||||||||| || |||||||||||    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccataga 8521429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 15941324 - 15941385
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    |||||||||||||| ||||  |||||||||| | ||||||  ||||||||||||||| ||||    
T  15941324 cataattaataaaacgtaccatttggtccctcactttttcttccgtttgtcaaataagtcct 15941385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 26912291 - 26912251
Alignment:
Q  229 accatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  26912291 accatagacttcattaaattttttaattttaaccgtttgat 26912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 63130 - 63039
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||||||||||||  |||||||||||||| || ||| ||||||| || ||||||||| |||||||||||||||||||||||| |||||||||    
T  63130 tgttaagtttaacttcaaatgtctatgatggatcaatcttaagaatggtccaccataaacttcattaattttttaaattttaaccgtttgat 63039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 124023 - 124143
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt-cgttgttgttaagtttaaccacaaatgtctatgatagac 210  Q
    ||||||||||| |||||||||||||||| | ||||||| | ||||| ||||||||||||| ||     ||||||||||||| ||||| |||||| | |||    
T  124023 aattaataaaacgtacattttggtccctcactttttcctctgtttgccaaataaatccttacg-----gttaagtttaaccccaaatatctatggtggac 124117  T
Q  211 caaccttaagagtgttccaccataga 236  Q
    |||||||||||||| |||||||||||    
T  124118 caaccttaagagtggtccaccataga 124143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 125295 - 125157
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct-tcgttgttgttaagtttaaccacaa---atgtctatgata 207  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||  ||     ||||||||||||| |||   |||| ||||||     
T  125295 aattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcctaacg-----gttaagtttaaccccaaatgatgtatatgatg 125201  T
Q  208 gaccaaccttaagagtgttccaccatagacttcattaatttttt 251  Q
    |||||||||||| |||| |||||||||||| | ||||| |||||    
T  125200 gaccaaccttaaaagtggtccaccatagaccttattaaattttt 125157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 42872257 - 42872114
Alignment:
Q  106 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatga 205  Q
    ||||||||| ||||||| |||| |||| |||| | | ||||||| ||||||||||||||||||||  |  |  ||||| ||||||| ||||||||||||     
T  42872257 tctcataatgaataaaacgtacgttttagtccttcactttttcctccgtttgtcaaataaatcct--gacg--gttaactttaacctcaaatgtctatgg 42872162  T
Q  206 tagaccaaccttaagagtgttccaccatagacttcattaattttttaa 253  Q
    ||||||||||||||||||| || ||||||||    |||||||||||||    
T  42872161 tagaccaaccttaagagtggtctaccatagatcctattaattttttaa 42872114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 38696427 - 38696519
Alignment:
Q  180 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||||||  ||||||||||| |||||||||||||| |||| |||||||||||  | ||||||||||  ||||||| || |||||||||    
T  38696427 ttaagtttaaccctaaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataattttaaccctttgatttt 38696519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 14840896 - 14840807
Alignment:
Q  180 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||||||||||||||| | ||||||| |||| |||| ||||||||||   | ||||| ||||| ||||| | |||||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttgat 14840807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 8571679 - 8571559
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 211  Q
    ||||||||||| |||| ||||||||| | | ||||| | ||||||  ||||||||||| | ||   |||||||||||||| |||||||||||| | ||||    
T  8571679 aattaataaaacgtacgttttggtccttcatttttttctccgtttaccaaataaatccctagtc--tgttaagtttaaccccaaatgtctatggtggacc 8571582  T
Q  212 aaccttaagagtgttccaccata 234  Q
    ||| |||| | || |||||||||    
T  8571581 aactttaaaaatggtccaccata 8571559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 10669444 - 10669386
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||| ||||||| |||||||||||| |  |||||||||||||||| |||||||||||    
T  10669444 tgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 10669386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 24192662 - 24192604
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||| |||||||  ||||||||||| | ||||||||||||||||| |||||||||||    
T  24192662 tgttaactttaaccctaaatgtctatggtggaccaaccttaagagtggtccaccataga 24192604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 22551122 - 22551214
Alignment:
Q  177 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    ||||||||||||||| ||||| |||||| | ||| |||||||| |||| ||||||||| || | ||||| ||||  ||||| | |||||||||    
T  22551122 ttgttaagtttaaccccaaatctctatggtggacaaaccttaaaagtgatccaccataaaccttattaaattttgtaatttaaaccgtttgat 22551214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 26696586 - 26696645
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 171  Q
    |||||||||||  ||||||||||||||| | ||||||| || |||| |||||||||||||    
T  26696586 aattaataaaacatacattttggtccctcactttttcctccatttgccaaataaatcctt 26696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 7486239 - 7486285
Alignment:
Q  226 tccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    |||||||||||| | ||||| |||||||||||||||| |||||||||    
T  7486239 tccaccatagaccttattaaatttttaaattttagccttttgatttt 7486285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 17594524 - 17594454
Alignment:
Q  441 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 511  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  17594524 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 17594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 32798594 - 32798536
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||| |||| |||| |||||| | ||||| | ||||||||||||||||||||    
T  32798594 aattaataaaacgtaccttttagtccctcaattttttctccgtttgtcaaataaatcct 32798536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 30787665 - 30787604
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||||||  || |||||||||||| | ||||||  ||||||| ||||||||||||    
T  30787665 cataattaataaaatatatattttggtccctcactttttcttccgtttgccaaataaatcct 30787604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 42877736 - 42877793
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| ||||||| |||| | |||||||||||||| || |||||||||||    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccataga 42877793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 17455164 - 17455252
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgttt 266  Q
    |||||| ||||||  ||||| |||||| |||||||| ||||| |||| |||||||||||  | ||||||| ||| ||||| | ||||||    
T  17455164 tgttaactttaacttcaaatatctatgctagaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttt 17455252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 32507025 - 32506952
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatttttt 251  Q
    |||||||||||||| ||||| |||||| | ||||||||||||||||| || |||||| ||||||||||||||||    
T  32507025 tgttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtctaccatatacttcattaatttttt 32506952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 32505785 - 32505876
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatt-aattttttaaattttagccgtttgat 269  Q
    |||||||||||||| ||||||||||| || || |||| ||||||||| |||||||||||| | ||| |||||||||| ||| | |||||||||    
T  32505785 tgttaagtttaaccccaaatgtctataatgga-caacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttgat 32505876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 12669840 - 12669898
Alignment:
Q  178 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    |||||| ||||||| ||||||| |||| | ||||||||||||||||| |||||||||||    
T  12669840 tgttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccataga 12669898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 34024126 - 34024073
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataa 165  Q
    ||||||||||| |||||||||| ||||| | ||||||| |||||||||||||||    
T  34024126 aattaataaaatgtacattttgatccctcactttttcctccgtttgtcaaataa 34024073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 6452336 - 6452396
Alignment:
Q  110 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 170  Q
    ||||||||||||| |||| |||| |||||| | ||||||| ||||||| ||||||||||||    
T  6452336 ataattaataaaaggtacgttttagtccctcactttttcctccgtttgccaaataaatcct 6452396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 6452576 - 6452514
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 171  Q
    |||||||||||||| |||| |||  |||||| | ||||||| ||||||| |||||||||||||    
T  6452576 cataattaataaaacgtacgtttgagtccctcattttttcctccgtttgccaaataaatcctt 6452514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 32506887 - 32506854
Alignment:
Q  310 ttattttacaatgatccaacaacaactaccattg 343  Q
    |||| |||||||||||||||||||||||||||||    
T  32506887 ttatcttacaatgatccaacaacaactaccattg 32506854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 681 - 589
Alignment:
Q  177 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 269  Q
    |||| |||||||||| ||||||| ||| || ||||||||||||||||| |||||||||||| | ||||| ||||| ||||| | |||||||||    
T  681 ttgtcaagtttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 2538 - 2483
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 167  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||  |||||||||    
T  2538 aattaataaaaagtaccttttggtcccttagtttttcctctgttttccaaataaat 2483  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 43574 - 43478
Alignment:
Q  179 gttaagtttaaccacaa---atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 272  Q
    ||||||||||||| |||   ||||||||| | |||||| |||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  43574 gttaagtttaaccccaagtgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 43478  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 108564 - 108626
Alignment:
Q  109 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 171  Q
    |||||||||||||| |||| ||||| ||||| | ||||||| || |||| |||||||||||||    
T  108564 cataattaataaaacgtacgttttgatccctcattttttcctccatttgccaaataaatcctt 108626  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 52646 - 52703
Alignment:
Q  112 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 169  Q
    ||||||||||| |||| ||||||||||| || |||| | ||||||| |||||||||||    
T  52646 aattaataaaatgtacgttttggtccctcagatttttctccgtttgccaaataaatcc 52703  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 127551 - 127608
Alignment:
Q  179 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 236  Q
    ||||| ||||||| |||||||||||| |  | |||||||||||||| |||||||||||    
T  127551 gttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccataga 127608  T

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