View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_23 (Length: 578)
Name: NF1773_low_23
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 4597104 - 4597431
Alignment:
| Q |
12 |
atgaaaatatgagttgttaaagcaaaagaaagcaagaatggatgttaccgtgcgtgagaaaaagttggcaagagaagcaccccatcctccaacatcaaag |
111 |
Q |
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| T |
4597104 |
atgaaaatatgagttgttaaagcaaaacaaagcaagaatggatgttactgtgcgtgagaaaaagttggaaagagaagcaccccatcctccaacatcaaag |
4597203 |
T |
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| Q |
112 |
gattcctcagtgattgagtcaccgaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttggtgggttcagttcaag |
211 |
Q |
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| T |
4597204 |
gattcctcagtgattgagtcaccaaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttggtgggttcagttcagg |
4597303 |
T |
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| Q |
212 |
tgaaagaaatggaagagggtcttagatcatataactatgttgatgcattaataaagtaaataagattccactacaatgactacatactcaatctccagat |
311 |
Q |
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| T |
4597304 |
tgaaagaaatggaagagggtcttagatcatataactatgttgatgcattaataaagtaaataagattccactacaatgactacattctcaatcaccagat |
4597403 |
T |
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| Q |
312 |
aaaaaattataaaatgtatttggagaaa |
339 |
Q |
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| T |
4597404 |
aaaaaattataaaatgtatttggagaaa |
4597431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 337 - 561
Target Start/End: Original strand, 4597503 - 4597736
Alignment:
| Q |
337 |
aaaaaatataagttttactgttccatctatcccatattaaaatgatccattggactattttacattgaggttacttattatgtactctatgctctactct |
436 |
Q |
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| T |
4597503 |
aaaaaatataagttttactgttccttctatcccatattaaaatgatccattggactattttacattgaggttacttattatgtactctatgctctattct |
4597602 |
T |
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| Q |
437 |
aaaatttataaattatttcttatctttcattgttataaatcatttctcc--------tctttcnnnnnnnnnnngacataagttatacattatttattac |
528 |
Q |
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| T |
4597603 |
aaaatttataaattatttcttatctttcattgttataaatcatttctcctctttttttctttttttttttttttgacataagttatacattatttcttac |
4597702 |
T |
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| Q |
529 |
cttctatctttca-ttgtttgccattgcacaact |
561 |
Q |
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| T |
4597703 |
cttctatctttcatttgtttgccattgcacaact |
4597736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 4587579 - 4587651
Alignment:
| Q |
56 |
ttaccgtgcgtgagaaaaagttggcaagagaagcaccccatcctccaacatcaaaggattcctcagtgattga |
128 |
Q |
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| T |
4587579 |
ttaccgtacgagagaaatagttggcaaaagaagcaccccatcctccaacaccaaaggattcttcagtgattga |
4587651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 4602122 - 4602206
Alignment:
| Q |
57 |
taccgtgcgtgagaaaaagttggcaagagaagcaccccatcctccaacatcaaaggattcctcagtgattgagtcaccgaaaaga |
141 |
Q |
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| T |
4602122 |
taccgtgcgagagaaatggttggcaagagaagcaccccatcctccaacagagaatgaatcttcagtgattgaatcaccgaaaaga |
4602206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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