View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_24 (Length: 576)
Name: NF1773_low_24
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Original strand, 2488627 - 2489178
Alignment:
| Q |
7 |
tccaagaatatttcaagtctttaaaca-tagcttgttatataagttaacattttatctcctaaacgtccgtggttagcttctttataaatacttattctc |
105 |
Q |
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| T |
2488627 |
tccaataatatttcaagtctttaaacagtagcttgttatataagttaacattttatctcctaaacgtccgtggttagcttctttataaatacttattctc |
2488726 |
T |
|
| Q |
106 |
caacaaagacttgcttataagttaaatacatactcctctcaacttaaataaacgcaaaaagtgcatgtatctggttcaccatgtaacttgtctaaacatg |
205 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2488727 |
caacaaagactttcttataagttaaatacatactcctctcaacttaaataaacgcaaaaagtacatgtatctggttcaccatgtaacttgtctaaacatg |
2488826 |
T |
|
| Q |
206 |
gacaagatgcatgtattcttttgcttatatttaagtcgagaggagtgaatatttcagttgaggatagacaacactgtgtcgtggtgaatgtcaaatcggt |
305 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488827 |
gacaagatacgtgtatttttttgcttatatttaagtcgagaggagtgaatatttcagttgaggatagacaacactgtgtcgtggtgaatgtcaaatcggt |
2488926 |
T |
|
| Q |
306 |
aggataggcaattataactgataaatagcatattttgaaaaagaactaatcaaaagtcaaaggactcaccactttgaagagtggatacattagcataaaa |
405 |
Q |
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| T |
2488927 |
aggataggcaattataactgataaatagcatattttgaaaaagaactaatcaaaagtcaaaggactcaccactttgaagagtggatacattagcataaaa |
2489026 |
T |
|
| Q |
406 |
ttgatagtcattataccacatgaaacaattgggtccataaatttcccatcttcttttatttccaattgtagctccgaaagaaactagttgatcatcaagg |
505 |
Q |
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| T |
2489027 |
ttgatagtcattataccacatgaaacaattgggtccataaatttcccatcttcttttatttccaattgtagctccgaaagaaactagttgatcatcaagg |
2489126 |
T |
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| Q |
506 |
caccttctgcagtcctgtctattgatatctcttgtgcactgagccattccat |
557 |
Q |
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| T |
2489127 |
caccttctgcagtcctgtctattgatatctcttgtgcactgagccattccat |
2489178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 2491921 - 2492462
Alignment:
| Q |
16 |
atttcaagtctttaaaca-tagcttgttatataagttaacattttatctcctaaacgtccgtggttagcttctttataaatacttattctccaacaaaga |
114 |
Q |
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||||||||||||| || | |||||| | || ||||||||||| ||| || ||||| |||| | ||| || || ||||||||| ||| ||| ||||| |
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| T |
2491921 |
atttcaagtcttttaataatagcttctcatgtaagttaacatcttaacttgtaaacctccgcgtttaactcctatataaatacagattttcctgtaaaga |
2492020 |
T |
|
| Q |
115 |
cttgcttataagttaaatacatactcctctcaacttaaataaacgcaaaaagtgcatgtatctggttcaccatgtaa----cttgtctaaacatggacaa |
210 |
Q |
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| | ||||||||||||| ||| ||||||||| ||||||||||| |||||| || || |||||| |||| ||| |||| |||||| ||| || | | |
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| T |
2492021 |
cattcttataagttaaagacacactcctctctacttaaataaaagcaaaacgtacaagtatcttgttccccaagtaattaacttgtcgaaatgtgatcca |
2492120 |
T |
|
| Q |
211 |
gatgcatgtattcttttgcttatatttaagtcgagaggagtgaatatttcagttgaggatagacaacactgtgtcgtggtgaatgtcaaatcggtaggat |
310 |
Q |
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||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||| | |||| | |||||| |
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| T |
2492121 |
gatacatgtatt-ttttgctaatatttaagtcgagaggagtgcatatttcagttgaggatagacaaca-tgtgtccttgtgaatcttaaattgataggat |
2492218 |
T |
|
| Q |
311 |
aggcaattataactgataaatagcatattttgaaaaagaactaatcaaaagtcaaaggactcaccactttgaagagtggatacattagcataaaattgat |
410 |
Q |
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|| ||||||||| ||| ||||| ||| || |||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| |
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| T |
2492219 |
agacaattataattgagaaatatgttatatttaaaaagaactaaccaaaagtcaaaggactcaccacttggaagaaaggatacactagcataaaactgat |
2492318 |
T |
|
| Q |
411 |
agtcattataccacatgaaacaattgggtccataaatttcccatcttcttttatttccaattgtagctccgaaagaaactagttgatcatcaaggcacct |
510 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||| || || || || ||| ||| || ||||| |
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| T |
2492319 |
agtcatcataccacatgaaacaattggatccataaatttcccatcttgtattatttctaattgt---tctgatgttaatcagctgagaatccagacacct |
2492415 |
T |
|
| Q |
511 |
tctgcagtcctgtctattgatatctcttgtgcactgagccattccat |
557 |
Q |
| |
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| ||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
2492416 |
tttgcagtcctttctactaatatctcttgtgcactgagccattccat |
2492462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 340 - 546
Target Start/End: Original strand, 2495372 - 2495578
Alignment:
| Q |
340 |
ttgaaaaagaactaatcaaaagtcaaaggactcaccactttgaagagtggatacattagcataaaattgatagtcattataccacatgaaacaattgggt |
439 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||||| |||||||||||||||||| | |
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| T |
2495372 |
ttgaaaaagaactaaccaaaagtcaaaggactcaccacttagaagagtggagacattagaataaaactgatagtcatcataccacatgaaacaatttaat |
2495471 |
T |
|
| Q |
440 |
ccataaatttcccatcttcttttatttccaattgtagctccgaaagaaactagttgatcatcaaggcaccttctgcagtcctgtctattgatatctcttg |
539 |
Q |
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|||| || |||||||||||||||||||||||| || | ||||| || | |||| |||| | |||||||||||||||| |||| |||||||||||| |
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| T |
2495472 |
ccatgaacttcccatcttcttttatttccaataaaagtttcgaaattgaccaattgagcatccaaacaccttctgcagtcctttctactgatatctcttg |
2495571 |
T |
|
| Q |
540 |
tgcactg |
546 |
Q |
| |
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| T |
2495572 |
tacactg |
2495578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 2495279 - 2495359
Alignment:
| Q |
227 |
tgcttatatttaagtcgagaggagtgaatatttcagttgaggatagacaacactgtgtcgtggtgaatgtcaaatcggtag |
307 |
Q |
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|||||||| |||||||||||||||| ||||||||||||| |||| |||||| |||||| | |||| | |||||| ||||| |
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| T |
2495279 |
tgcttataattaagtcgagaggagtacatatttcagttgaagatatacaacattgtgtcctagtgagtctcaaattggtag |
2495359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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