View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_28 (Length: 565)
Name: NF1773_low_28
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 51 - 499
Target Start/End: Original strand, 28122776 - 28123226
Alignment:
| Q |
51 |
atcgtggttatattgttatatttaatttcctccctttctttttgtttcattttctccgaagtacttgagaacttttcnnnnnnn--ttcacaattacttc |
148 |
Q |
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| T |
28122776 |
atcgtggttatattgttatatttaatttcctccctttctttttgtttcattttctccgaagtacttgagaacttttcaaaaaaaaattcacaattacttc |
28122875 |
T |
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| Q |
149 |
ttgttgacagtataatatgtggctgatgttgatgagtcacgaatactggaaagaaaaagatgcatgtacagtatatgtatctcataatgatcaatgcatg |
248 |
Q |
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| T |
28122876 |
ttgttgacagtataatatgtggctgatgttgatgagtcacgaatactagaaagaaaaagatgcatgtgcagtatatgtatctcataatgatcaatgcata |
28122975 |
T |
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| Q |
249 |
ctatgtgtgaaagtgttgtttcatgtttgcaaactttacattctatatttataagtccttgcgcgtccaacttgttgtgtgtaactaggagtaagggtat |
348 |
Q |
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| T |
28122976 |
ctatgtgtgaaagtgttgtttcatgtttgcaaactttacattctatatttataagttcttgcgcgtccaacttgttgtgtgtaactaggagtaagggtat |
28123075 |
T |
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| Q |
349 |
atcgcttttagtttcgttgcgagagaataaaaaggtttaagattgatgtttattgtagttctgtctatgaatcggtcttttctccaacgagtacaacatg |
448 |
Q |
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| T |
28123076 |
atcgcttttagtttcgttgcgagagaataaaaaggtttaagattgatgtatattgtagttctgtctatgaatcggtcttttctccaacgagtacagcatg |
28123175 |
T |
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| Q |
449 |
taggtgtgtgtattgagttggctttgcatgtgtttcaaagcttgattatgt |
499 |
Q |
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| T |
28123176 |
tatgtgtgtgtattgagttggctttgcatgtgtttcaaagcttgattatgt |
28123226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 28123298 - 28123339
Alignment:
| Q |
496 |
atgtcccaatgctagttttaccatgattttgtgacgctggat |
537 |
Q |
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| T |
28123298 |
atgtcccagtgctagttttaccatgattttgtgaagctggat |
28123339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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