View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_31 (Length: 538)
Name: NF1773_low_31
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 330 - 528
Target Start/End: Complemental strand, 48020104 - 48019906
Alignment:
| Q |
330 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020104 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
48020005 |
T |
|
| Q |
430 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtg |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020004 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtg |
48019906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 48020309 - 48020198
Alignment:
| Q |
125 |
cagctgaagggatttttcttgggtttcagcactaccttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020309 |
cagctgaagggatttttcttgggtttcaacactaccttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaa |
48020210 |
T |
|
| Q |
225 |
tgtaatcatcaa |
236 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48020209 |
tgtaatcatcaa |
48020198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 48020416 - 48020371
Alignment:
| Q |
19 |
cgtaagtcacccattttgttgtaatttgcttttcatgtaataccca |
64 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020416 |
cgtaagtaacccattttgttgtaatttgcttttcatgtaataccca |
48020371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University