View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_32 (Length: 533)
Name: NF1773_low_32
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 32243968 - 32243458
Alignment:
| Q |
1 |
tgatcaaacaaatatatacgagtgatacttaattctatacctcctatnnnnnnnngttgtaaagagtagtaactaatcatgtttctcagtcttcgcgatg |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243968 |
tgatcaaacaaatat----gagtgatacttaattctatacctcctataaaaaaagttagtaaagagtagtaactaatcatgtttctcagtcttcgcgata |
32243873 |
T |
|
| Q |
101 |
gtacaaccactcttggactcaggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243872 |
gtacaaccactcttggactcaggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttgga |
32243773 |
T |
|
| Q |
201 |
cataccgagataatgtagcttcttcaatcaaacctttaggtttatcactaccaatatcgacattaatattaccattgaaaacttctccagatgccataat |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243772 |
cataccgggataatgtagcttcttcaatcaaacctttaggtttagcactaccaatatcgacattaatattaccattgaaaacttctccagatgccataat |
32243673 |
T |
|
| Q |
301 |
ttccaatgtgtcatgcacctcgccatcatgatttccaacataagaaaccacgagcttctgctttgtagccactagtctaatgtacccaaattcaccccca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243672 |
ttccaatgtgtcatgcacctcgccatcatgatttccaacataagaaaccacgagcttctgctttgtagccactagtctaatgtacccaaattcaccccca |
32243573 |
T |
|
| Q |
401 |
cgatacaaagaccgttttggttgtggaaagatcgagtcattgggatgacccggtcttgttttccagatggattgcttgtcttgccctgccatgccaatca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243572 |
cgatacaaagaccgttttggttgtggaaagatcgagtcattgggatgacccggtcttgttttccagatggattgcttgtcttgccctgccatgccaatca |
32243473 |
T |
|
| Q |
501 |
caagatgaacggtat |
515 |
Q |
| |
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||||||||||||||| |
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| T |
32243472 |
caagatgaacggtat |
32243458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 70 - 517
Target Start/End: Complemental strand, 32249003 - 32248537
Alignment:
| Q |
70 |
taactaatcatgtttc-tcagtcttcgcgatggtacaaccactcttggactcaggct---tcttccttgcatgtataacccaacagagaatgtaacccat |
165 |
Q |
| |
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|||||||||||||||| ||||||||| || | || |||||||| ||||||| |||| ||||||| |||||| ||| ||| |||||||| ||||| |
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| T |
32249003 |
taactaatcatgtttcctcagtcttcacggggctaaaaccactcctggactcgggctgcttcttcctagcatgtgaaacgaaaccaagaatgtagcccat |
32248904 |
T |
|
| Q |
166 |
aaaggccccaagcaccagtacacttcctccttggacataccgagataatgtagcttcttcaatcaaacctttaggtttatcactaccaatatcgacatta |
265 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| || || || | ||||| |||| ||||| ||||||| ||||||||||| || ||||| |
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| T |
32248903 |
aaaggccccaagcactagtacacttcctccctggacataccacgacaacgtggattctttaatctgaccttcaggtttagcactaccaataccgccatta |
32248804 |
T |
|
| Q |
266 |
atatta---------------ccattgaaaacttctccagatgccataatttccaatgtgtcatgcacctcgccatcatgatttccaacataagaaacca |
350 |
Q |
| |
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| |||| ||| | | ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
32248803 |
acattatcgttaccaccaccaccactaacaacttctccagattccagaatctccaatgtgtcatgcacctcgccatcatgattaccaacataagaaatca |
32248704 |
T |
|
| Q |
351 |
cgagcttctgctttgtagccactagtctaatgtacccaaattcacccccacgatacaaagaccgttttggttgtggaaagatcgagtcattgggatgacc |
450 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||| || || |||||||| || |||||||| ||||||||||||||| |||| | | ||| ||||||| | |
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|
| T |
32248703 |
cgagattctgctttgtagccatcaatctaatgtatccgaactcacccccgcggtacaaagatcgttttggttgtggatagattgggacatcgggatgatc |
32248604 |
T |
|
| Q |
451 |
cggtcttgttttccagatggattgcttgtcttgccctgccatgccaatcacaagatgaacggtatga |
517 |
Q |
| |
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|||||||| | ||| |||| |||| |||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
32248603 |
cggtcttggtcgccacatgggttgccagtcttgccctgccatgccgatcacaagatgaatggtatga |
32248537 |
T |
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