View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_33 (Length: 529)
Name: NF1773_low_33
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 153 - 510
Target Start/End: Original strand, 38706006 - 38706360
Alignment:
| Q |
153 |
ttcaacctgcaaaaatagacaacaacaaaattctattgtatttgtatatcctaaaccaattgtttaaaatttttaaatagaaaaggatggaaagtgaatg |
252 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38706006 |
ttcaacctgcaaaaatagacaa---caaaattctattgtatttgtatatcctaaaccaattgtttaaaaattttaaatagaaaaggatggaaagtgaatg |
38706102 |
T |
|
| Q |
253 |
ggtataccagaatatgggcatcgtttaattgttgatttgtgattagcttataaatttccttgcacatagcatcagcacaattggtctttgtttcaagcag |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
38706103 |
ggtataccagaatatgggcatcgtttaattgctgatttgtgattagcttataaatttccttgcacatagcatcatcacaatcggtctttgtttcaagcag |
38706202 |
T |
|
| Q |
353 |
tgatcgttcatctacaatcaacttttccagcaacctttcgctgaaatataatatttatagacaaataatcacttttcaacacaaccattttcttgtttaa |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
38706203 |
tgatcgttcatctacaatcaacttttccagcaacctttcgctgaaatataatatttatagacaaataatcagttttcaacacaaccattttcttgttcaa |
38706302 |
T |
|
| Q |
453 |
aaggtcaaatacacatttaaaaggtcattaccaggtggaaacattgaactgattgttg |
510 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706303 |
aaggtcaaatacaaatttaaaaggtcattaccaggtggaaacattgaactgattgttg |
38706360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 38701846 - 38701964
Alignment:
| Q |
37 |
tttatgtttaaaatataccattgggattcaatgagataaaggtaattagcaactcgatcacataagtattcaatatactctagaacaacaatcaagtttc |
136 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38701846 |
tttatgtttaaaatataccattgggatccaatgagataaaggtgattagcaactcgatcacaaaagtattcaatatactctagaacagcaatcaagtttc |
38701945 |
T |
|
| Q |
137 |
tctgatccataagacattc |
155 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38701946 |
tctgatccataagacattc |
38701964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University