View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_35 (Length: 516)
Name: NF1773_low_35
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 54892161 - 54892538
Alignment:
| Q |
14 |
aaattgcaagtctaagaaaaattaaatcatctcaattcttagaactttggttgaacacttattcaatgtgaaattcttaccacaaattacagcatgtcag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54892161 |
aaattgcaagtctaagaaaaattaaatcatctcaattcttagaactttggttgaacacttattcaatgtgaaattcttaacacaaattacagcatgtcag |
54892260 |
T |
|
| Q |
114 |
aagaccacacactcactcaattggattaatatttagtgtggtaaattggaaaagtaactgaaaacgtgagttatttgatcttcgtccaacaatactaatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54892261 |
aagaccacacactcactcaattggattaatatttagtgtggtaaattggaaaagtaactgaaaacgtgagttatttgatctttgtccaacaatactaatt |
54892360 |
T |
|
| Q |
214 |
cacgggccgctattttaacacgatagaaaccatttccatctaaaactagaacatcccttgcacattctctgacttacagtcatgtactcattgtattgaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54892361 |
cacgggccgctattttaacacgatagaaaccatttccatctaaaactagaacatcccttgcatattctctgacttacagtcatgtactcattgtattgaa |
54892460 |
T |
|
| Q |
314 |
cttggagttcatggtagcaatccaccacaaactaagagcttgtttgatgcaacagttcttgcttgtgaagttagtctt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54892461 |
cttggagttcatggtagcaatccaccacaaactaagagcttgtttgatgcaacagttcttgcttgtgaagtcagtctt |
54892538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 455 - 502
Target Start/End: Original strand, 54892602 - 54892649
Alignment:
| Q |
455 |
ctggactgctagcacatactagtaatactaaagacataggataaatct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54892602 |
ctggactgctagcacatactagtaatactaaagacataggataaatct |
54892649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 54879622 - 54879668
Alignment:
| Q |
117 |
accacacactcactcaattggattaatatttagtgtggtaaattgga |
163 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
54879622 |
accacacattcactcaattggattaatatttagtgcggtaagttgga |
54879668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 54883897 - 54883947
Alignment:
| Q |
238 |
agaaaccatttccatctaaaactagaacatcccttgcacattctctgactt |
288 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
54883897 |
agaatccatttccatctagaactagaacatccctacctcattctctgactt |
54883947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 54884252 - 54884298
Alignment:
| Q |
117 |
accacacactcactcaattggattaatatttagtgtggtaaattgga |
163 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
54884252 |
accacacattcactcaattggataaatatttaatatggtaaattgga |
54884298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University