View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_37 (Length: 488)
Name: NF1773_low_37
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 1424564 - 1424831
Alignment:
| Q |
9 |
gataatactccgctatggcgtactggtcctggtggtccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaatacc |
108 |
Q |
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| T |
1424564 |
gataatactccgcaatggcgtgtaggtccagatggtccaaaaacactttgtaatgcatgtggggttaggtataggtctggccgacttgtacctgaatacc |
1424663 |
T |
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| Q |
109 |
gccctgcaaatagcccaactttttgcagcaacgtgcattctaattcccacagaaaagtagtggaaataaggaagcagaagagaataagaataggatgaat |
208 |
Q |
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| T |
1424664 |
gccctgcaaatagcccaactttttgcagcaacgtgcattctaattcccacagaaaagtagtggaaataaggaagcagaagagaataagaataggatgaat |
1424763 |
T |
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| Q |
209 |
gccattggtaaaatgaaaagtggtagctagtgaaacatttctttttagaagttagcttgcaataaatt |
276 |
Q |
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| T |
1424764 |
gccattggtaaaatgaaaagtggtagctagtgaaacatttctttttagaagttagcttgcaataaatt |
1424831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 1424258 - 1424426
Alignment:
| Q |
9 |
gataatactccgctatggcgtactggtcctggtggtccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaatacc |
108 |
Q |
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| T |
1424258 |
gataatactccgctatggcgtacaggtcctggtggtccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaatacc |
1424357 |
T |
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| Q |
109 |
gccctgcaaatagcccaactttttgcagcaacgtgcattctaattcccacagaaaagtagtggaaataa |
177 |
Q |
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| T |
1424358 |
gccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtggaaataa |
1424426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 352 - 470
Target Start/End: Original strand, 1424907 - 1425025
Alignment:
| Q |
352 |
gatgggcagtgaaagtttttaagttagggaggcctcaaatcatttcattgtaaaatttggttttttcattttatgttgctcacatcacatgtattttgat |
451 |
Q |
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| T |
1424907 |
gatgggcagtgaaagtttttaagttagggaggcctcaaatcatttcattgtaaaatttggttttcgcattttatgttgctcacatcacatgtattttgat |
1425006 |
T |
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| Q |
452 |
tggggattagggagaagat |
470 |
Q |
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| T |
1425007 |
tggggattagggagaagat |
1425025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 17601768 - 17601582
Alignment:
| Q |
45 |
ccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaataccgccctgcaaatagcccaactttttgcagcaacgtgc |
144 |
Q |
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| T |
17601768 |
ccaaagacgctttgtaatgcatgtggggttaggtataagtctggccgacttgtacctgaataccgtcctgcaaatagcccaacttttcgcagtgacgtgc |
17601669 |
T |
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| Q |
145 |
attctaattcccacagaaaagtagtggaaataaggaagcagaagagaataagaataggatgaatgccattggtaaaatgaaaagtgg |
231 |
Q |
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| T |
17601668 |
attctaattcccacaggaaagtagtggagatgaggaagcagaagggaatgggaacgggttgaaagtcattgataaaatgaaaagtgg |
17601582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 42714549 - 42714619
Alignment:
| Q |
45 |
ccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaataccgccctgc |
115 |
Q |
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| T |
42714549 |
ccaaaaacactctgcaatgcttgcggtgttcggtacaagtctggccgacttttccctgaataccggcctgc |
42714619 |
T |
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