View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_38 (Length: 486)
Name: NF1773_low_38
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 38398985 - 38398531
Alignment:
| Q |
18 |
gattatgcatgcatgtgttgttggtagaaaagagactattaattcaactacttgttatattttctgataatttatcactttctatttgatcccattggaa |
117 |
Q |
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| T |
38398985 |
gattatgcatgcatgtgttgttggtagaaaagagactatta---------cttgtcatattttctgat---ttatcactttctatttgatcccattggaa |
38398898 |
T |
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| Q |
118 |
cgattaattttgtttttcatgccttgtaggttatgttggcattaaatttgaggaccaatgtgttaatatttctttagtgaattttaattgtattaatgtt |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398897 |
tgattaattttgtttttcatgccttgtagattatgttggcattaaatttgaggaccaatgtgttaatatttctttagtgaattttaattgtattaatgtt |
38398798 |
T |
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| Q |
218 |
tatatcgtttattttcttattggaccttatagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaat |
317 |
Q |
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| T |
38398797 |
tatatcgtttattttcttattggaccttatagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaat |
38398698 |
T |
|
| Q |
318 |
taatgcattagttttgatattgaatattggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttat |
417 |
Q |
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| T |
38398697 |
taatgcattagttttgatattgaatattggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttat |
38398598 |
T |
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| Q |
418 |
---tcttgtcgtggatccgcattcgatcttatagttcatcataaatgcggaaatcgttcttctcact |
481 |
Q |
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| T |
38398597 |
tcttcttgtcgtggatccgcattcgatcttatagttcatcataaatgcggaaatcgtgcttttcact |
38398531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 41119083 - 41119129
Alignment:
| Q |
168 |
aggaccaatgtgttaatatttctttagtgaattttaattgtattaat |
214 |
Q |
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| T |
41119083 |
aggaccgatatgttaatatttctttagtgaattttgattgtaataat |
41119129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 15010715 - 15010650
Alignment:
| Q |
412 |
tcttattcttgtcgtggatccgc-attcgatcttatagttcatcataaatgcggaaatcgttcttc |
476 |
Q |
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| T |
15010715 |
tcttattcttgtagtggatccgcgattcgatcttatagttcatcttgaatgtggcgatcgttcttc |
15010650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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