View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_39 (Length: 483)
Name: NF1773_low_39
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 7949268 - 7949759
Alignment:
| Q |
1 |
gggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtaaaataannnnnnnnnnn--------ataattgacgagccta-aggcgaca |
91 |
Q |
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| T |
7949268 |
gggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtataataatttattttattttatttttataactgatgagccttgaggcgaca |
7949367 |
T |
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| Q |
92 |
tctataatatataaatgaaaaagtgtaacacaaaagagaggg-ggcaaaaccaaaccatcaaaggaacattaacaaaatcgaaagttgggaagacctagc |
190 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7949368 |
tctataatatataaatgaaaaattgtaatacaaaagagagggtggcaaaaccaaaccctcaaaggaacattaacaaaatcgaaagttgggaagacctagc |
7949467 |
T |
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| Q |
191 |
ttgttcctacctaggtcccctctaattacaattgaaggaaaggaccaccaagtgaaatcaacaatagacaagcctaagtttgcaagtttgtcagcacagt |
290 |
Q |
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| T |
7949468 |
ttattcctacctaggtcccctctaattataattggaggaaaggaccac-aagtgaaatcagcaatagataagcctaagtttgcaagtttgtcagcacgat |
7949566 |
T |
|
| Q |
291 |
gatttccttctctgtaaatatgagacaggatgaattgcatagattgaagctttccaacacagttgttccatctattctttaatttccaaggaactataga |
390 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7949567 |
gattttcttctctgtaaatatgagacaagatgaattgcatagattgaagctttccaacacagttgttccatctattctttaatttccaaggaactataga |
7949666 |
T |
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| Q |
391 |
gggtgacttgatggccaaggtagctatcttggagtcagtctctatccaaaggagatgccagtttttatcaaaagcaatttcaacagccataat |
483 |
Q |
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| T |
7949667 |
gggtgacttgatggccaacgtagctatcttggagtcagtctctatccaaaggtgatgccattttttatcaaaaacaatttcaacagccataat |
7949759 |
T |
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