View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_41 (Length: 477)
Name: NF1773_low_41
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 4 - 458
Target Start/End: Original strand, 49670151 - 49670612
Alignment:
| Q |
4 |
gtcaaaatgtttacaaatacattaatatttttattttggaggagcaagaaagtccatggttctcggttcatcaacaccctctctaaccgaagatctctag |
103 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49670151 |
gtcaaagtgcttacaaatacattaatatttttattttggaggagcaagaaagtccatggttctcggttcatcaacaccctctctaaccgaagatctctag |
49670250 |
T |
|
| Q |
104 |
cccagccggattaaatacctatatttgcttttcaccaaaccaacttaacgtacaaaatttgaaatgactaagtatcaattatnnnnnnnnnnnnnnnnnn |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49670251 |
cccaaccggattaaatacctatatttgcttttcaccaaaccaacttaacgtacaaaatttgaaatgactaagtatcaattataaaaataaataaaaaaat |
49670350 |
T |
|
| Q |
204 |
nnnnnnngttacaa-tacgagaagaataaaataaagttcaactattggagttggagcgcactttcatttcattgttgcacttgcacttgcacac------ |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49670351 |
gaaaaaagttacaaatacgagaagaataaaataaagttcaactattggagttggagcgcactttcatttcattgttgcacttgcacttgcacacattata |
49670450 |
T |
|
| Q |
297 |
attatagagcttatatttgattctctgttttattaatggaataataataaagaaaaagaaaaacatctgcaattgtttcaactctatagtctagcttcta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49670451 |
attatagagcttatatttgattctctgttttattaatggaataataataaagaaaaagaaaaacatctgcaattgtttcaactctatagtctagcttcta |
49670550 |
T |
|
| Q |
397 |
tgtatttccttacgacaactgcatttcattttcaattatgcaaatgaaaaatattccctgtt |
458 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49670551 |
tgtatttccttacaacaactgcatttcattttcaattatgcaaatgaaaaatattccctgtt |
49670612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University