View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_44 (Length: 464)
Name: NF1773_low_44
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 45413077 - 45413500
Alignment:
| Q |
12 |
agagatttgatatgaaggggagggagcactaagcaacaacaagacataataaatcagaattgtcgaacaatgtctaatgacacttttttaatggtacagt |
111 |
Q |
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| T |
45413077 |
agagatttgatatgaaggggagggagcactaagcaacaaaaagacataataa-tcagaattgtcgaacaatgtctaatgacacttttttaatggta--gt |
45413173 |
T |
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| Q |
112 |
gtgatgccgagcacctgtcttggggacacaaaataaattcaatttaattttgttaacacatcatattcaaagtttcttctccattcaacacatagctccc |
211 |
Q |
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| T |
45413174 |
gtgatgccgagctcctgtcttggggacacaaaataaattcaatttaattt-gttaacacatcatattctaagtttcttctccattcaacacatagctccc |
45413272 |
T |
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| Q |
212 |
acgtgtaatatttcacgcttactaagcaattttattttccatgagcacgtcttannnnnnnnnnnnnnnnnnnnncctatggttcagaagttgaagaggg |
311 |
Q |
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| T |
45413273 |
acgtgtaatatttcacgcttactaagcaatttta-tttccatgagcacgtcttaatttttatttttattatttttcctatggttcagaagttgaagaggg |
45413371 |
T |
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| Q |
312 |
aacaagagctttaaaaaacaaaatcaaagagcaaaacttggtacaatttgcttgaatgtaaagaaacgacatgctacctaaagaaggaggtatgagacta |
411 |
Q |
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| T |
45413372 |
aacaagagctttaaaaaacaaaatcaaagagcaaaacttggtacaatttgcttgaatgtaaagaaacgacatgctacctaaagaaggaggtatgagacta |
45413471 |
T |
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| Q |
412 |
ctaaatactattcaaccaggagaaaagac |
440 |
Q |
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| T |
45413472 |
ctaaatactattcaaccgggagaaaagac |
45413500 |
T |
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