View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_45 (Length: 456)

Name: NF1773_low_45
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_45
NF1773_low_45
[»] chr6 (12 HSPs)
chr6 (1-439)||(6519601-6520059)
chr6 (6-188)||(6466293-6466475)
chr6 (6-220)||(6497601-6497815)
chr6 (6-220)||(6460857-6461071)
chr6 (1-130)||(6472071-6472200)
chr6 (6-124)||(6529223-6529341)
chr6 (6-130)||(6506504-6506628)
chr6 (268-428)||(6466027-6466187)
chr6 (14-133)||(6515133-6515252)
chr6 (30-115)||(7204169-7204254)
chr6 (30-115)||(7238920-7239005)
chr6 (18-108)||(6458416-6458506)
[»] chr7 (3 HSPs)
chr7 (14-133)||(9664344-9664463)
chr7 (4-108)||(3752862-3752966)
chr7 (3-130)||(4047250-4047377)
[»] chr4 (1 HSPs)
chr4 (14-133)||(13535368-13535487)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 6519601 - 6520059
Alignment:
Q  1 atttactatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6519601 atttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatc 6519700  T
Q  101 atcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttaccatagcttcttctaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6519701 atcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttaccataacttcttctaca 6519800  T
Q  201 aaaacttccaacgaaaaacacataatctcttcttacaatg--------------------atcccttcttcaaatttacgnnnnnnncttgttaggggaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||       |||||||||||||    
T  6519801 aaaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaatttacgtttttttcttgttaggggaa 6519900  T
Q  281 gtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatgagattctttctttttattccaatgattctcttacaaagtt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  6519901 gtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatgatattctttctttttattcgaacgattcccttacaaagtt 6520000  T
Q  381 tacattttaccttaacaatggccaaagttggattttgtatgcttcttcaccgataaact 439  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  6520001 tacattttaccttaacaatggtcaaagttggattttgtatgcttctacaccgataaact 6520059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 6466475 - 6466293
Alignment:
Q  6 ctatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaa 105  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||| ||||    
T  6466475 ctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaa 6466376  T
Q  106 actcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttaccata 188  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||| | |||| ||||||||||||  ||||||| ||||||    
T  6466375 actcatcactttctctttcttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctgatctcaccata 6466293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 6497815 - 6497601
Alignment:
Q  6 ctatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaa 105  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||     
T  6497815 ctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcag 6497716  T
Q  106 actcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttaccatagcttcttctacaaaaac 205  Q
    ||||||||||||||||||| || |||||   || | | | | |||||| |||||| |||||||||| |||||||||||||||  ||||  |||| |||||    
T  6497715 actcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgatcttaccatcacttccgctacgaaaac 6497616  T
Q  206 ttccaacgaaaaaca 220  Q
    |||||| ||||||||    
T  6497615 ttccaatgaaaaaca 6497601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 6460857 - 6461071
Alignment:
Q  6 ctatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaa 105  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||| | || ||||||||||| ||||| |||||||| |||||||||| ||| || |    
T  6460857 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcagatcttcca 6460956  T
Q  106 actcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttaccatagcttcttctacaaaaac 205  Q
    ||||||| |||||||| || || ||||| | || | | | | |||||| ||||||||||||||||| |||||||||||||||  |||| |||||||||||    
T  6460957 actcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgatcttaccatcacttcctctacaaaaac 6461056  T
Q  206 ttccaacgaaaaaca 220  Q
    |||||| ||||||||    
T  6461057 ttccaatgaaaaaca 6461071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6472071 - 6472200
Alignment:
Q  1 atttactatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatc 100  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||| |||| || ||||| |||||||||||||||||  ||||||| ||||||||||||||    
T  6472071 atttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatc 6472170  T
Q  101 atcaaactcatcactttctgtttcttaccc 130  Q
    ||||||||||||||||||||||||||||||    
T  6472171 atcaaactcatcactttctgtttcttaccc 6472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 6529341 - 6529223
Alignment:
Q  6 ctatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaa 105  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||| ||||||||||| |||     
T  6529341 ctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcag 6529242  T
Q  106 actcatcactttctgtttc 124  Q
    |||||||||||||| ||||    
T  6529241 actcatcactttctatttc 6529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 6506628 - 6506504
Alignment:
Q  6 ctatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaa 105  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||| || |||||   ||||||||| |||||||| |||||||||||||||||||    
T  6506628 ctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacctgaatactttcatccttacctcatcaaatcatcaa 6506529  T
Q  106 actcatcactttctgtttcttaccc 130  Q
    |||||||||||||||| || |||||    
T  6506528 actcatcactttctgtctcataccc 6506504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 6466187 - 6466027
Alignment:
Q  268 cttgttaggggaagtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatgagattctttctttttattccaatgatt 367  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||| ||| | ||||||  |||| |||| |||||  ||||||  ||||  ||| |||||||    
T  6466187 cttgttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatgcaattcttagttttagttctaatgatt 6466088  T
Q  368 ctcttacaaagtttacattttaccttaacaatggccaaagttggattttgtatgcttcttc 428  Q
    |||||||||||  ||| ||| |  |||||||||| ||||  ||||||||||||||||||||    
T  6466087 ctcttacaaagcatacttttcagtttaacaatggtcaaacatggattttgtatgcttcttc 6466027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 6515133 - 6515252
Alignment:
Q  14 acccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaactcatca 113  Q
    ||||||||| ||||||||||||||||||||||||  ||||| | | |||||   |||||||||  | ||||| |||||||||| |||| |||||||||||    
T  6515133 acccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatccttacctcatcagatcaacaaactcatca 6515232  T
Q  114 ctttctgtttcttacccatc 133  Q
    |||||| |||| ||||||||    
T  6515233 ctttctttttcatacccatc 6515252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 7204169 - 7204254
Alignment:
Q  30 tctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaactcatcact 115  Q
    |||||||||||||||||||||||||  || |||||||||||||||||  ||||||| |||||||| |||||||| |||||| ||||    
T  7204169 tctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcgaactcaccact 7204254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 7238920 - 7239005
Alignment:
Q  30 tctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaactcatcact 115  Q
    |||||||||||||||||||||||||  || |||||||||||||||||  ||||||| |||||||| |||||||| |||||| ||||    
T  7238920 tctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcgaactcaccact 7239005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 6458506 - 6458416
Alignment:
Q  18 ctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaact 108  Q
    ||||| |||||||||||||||||||| ||||||||  |||| ||||||  |||||| ||  |||| || |||||||||||||| |||||||    
T  6458506 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaact 6458416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 9664344 - 9664463
Alignment:
Q  14 acccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaactcatca 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||  |||| || || ||| ||||||| || |||||||||    
T  9664344 acccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactcatca 9664443  T
Q  114 ctttctgtttcttacccatc 133  Q
    |||||| |||| || |||||    
T  9664444 ctttctctttcgtatccatc 9664463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 3752862 - 3752966
Alignment:
Q  4 tactatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatc 103  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| | || ||||||  |||||||||  |||| || |||||||||||||| ||    
T  3752862 tactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctc 3752961  T
Q  104 aaact 108  Q
    |||||    
T  3752962 aaact 3752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 4047377 - 4047250
Alignment:
Q  3 ttactatccaaacccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcat 102  Q
    |||||||||| ||| ||||| |||||||| ||||||||||| ||||||||  |||| ||||| |||| ||||||  |||| || |||||  ||||||| |    
T  4047377 ttactatccacacctctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcct 4047278  T
Q  103 caaactcatcactttctgtttcttaccc 130  Q
    ||||||| || || |||||||| |||||    
T  4047277 caaactcttccctatctgtttcataccc 4047250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 13535368 - 13535487
Alignment:
Q  14 acccctcccgacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatattttcatccatacctcatcaaatcatcaaactcatca 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||  |||| || || ||| ||||||| || |||||||||    
T  13535368 acccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactcatca 13535467  T
Q  114 ctttctgtttcttacccatc 133  Q
    |||||| |||| || |||||    
T  13535468 ctttctctttcgtatccatc 13535487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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