View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_46 (Length: 454)
Name: NF1773_low_46
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 42395418 - 42395679
Alignment:
| Q |
13 |
gaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatgtt |
112 |
Q |
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| T |
42395418 |
gaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatgtt |
42395517 |
T |
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| Q |
113 |
ccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaatgaatttatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42395518 |
ccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaatgaatttatat |
42395617 |
T |
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| Q |
213 |
atacttgattaaacacaaaaatttaagatcctnnnnnnntattgattattagagaattgtta |
274 |
Q |
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| T |
42395618 |
atacttgattaaacacaaaaatttaagatcctaaaaaaatattgattattagagaattgtta |
42395679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 275 - 438
Target Start/End: Original strand, 42395703 - 42395855
Alignment:
| Q |
275 |
atagatccaagtagaccaacgaacacataactaatctaacactaatgtgaggtaaatatttagagaggtgacttaccatgttcatgaatcctacatgcaa |
374 |
Q |
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| T |
42395703 |
atagatccaagtagaccaacgaacacataacta-----------atgtgaggtaaatatttagagaggtgacttaccatgttgatgaaccctacatgcaa |
42395791 |
T |
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| Q |
375 |
aacttgtgtttttcctggttgttgctttcttgagctccattttagcagttgcagtagtttcttt |
438 |
Q |
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| T |
42395792 |
aacttgtgtttttcctggttgttgctttcttgtgctccattttagcagttgcagtagtttcttt |
42395855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 29296100 - 29295916
Alignment:
| Q |
18 |
ccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatgttccctc |
117 |
Q |
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|||||||||||||||||||| || ||||| || || || ||||| ||||| | ||||||| | |||||||| |||||||||| |||||||||||| |||| |
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| T |
29296100 |
ccagcaataggaccagctgtggtatataaatagcactgagaagctttcaagagtttctcttcctcttgcatcccaaaaatatgcttgaaaatgttacctc |
29296001 |
T |
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| Q |
118 |
tcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaat |
202 |
Q |
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| T |
29296000 |
ttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtctcagaaaatttaggacctaatttcactgcaat |
29295916 |
T |
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