View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_50 (Length: 442)
Name: NF1773_low_50
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 16371167 - 16371349
Alignment:
| Q |
16 |
cttttctcatacaataatagggattttattatttggacatttcgtgcaaaataaatttgtcatttttgatcaaatttttaagaaactataagaaaaagtt |
115 |
Q |
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| T |
16371167 |
cttttctcatacaataatagggattttattatttggacatttcgtgcaaaataaatttgtcatttttgatcaaattttcaagaaactataagaaaaagtt |
16371266 |
T |
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| Q |
116 |
aaatgcaagtgggggagtggggactattacaatgctctttgagaggggctggttaattaattaattttttatgcagattgtgt |
198 |
Q |
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| T |
16371267 |
aaatgcaaatgggggagtggggactattacaatgctctttgagaggggctggttaattaattaattttttatgtagattgtgt |
16371349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 365
Target Start/End: Original strand, 16371399 - 16371535
Alignment:
| Q |
229 |
aattagacaaaattttactataaactcgaagccggcttgaaggtaaaaactaaa-ttaaaggtctaaaagtccatttaattttagttttgggcgacaatg |
327 |
Q |
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| T |
16371399 |
aattagacaaaattttactataaactcgaagccggcttgaaggtaaaaactaaaattaaaggtctaaa-gtccatttaatttttgttttgggcgacaatg |
16371497 |
T |
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| Q |
328 |
ccaaattcacttcaatatgaaaagtataatgccctata |
365 |
Q |
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| T |
16371498 |
ccaaattcacttcaatatgagaagtataatgccctata |
16371535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 362 - 439
Target Start/End: Original strand, 16371564 - 16371640
Alignment:
| Q |
362 |
tataaacaataattaaaaaataatagcaaataaaggatatttgatagacattttataacttccttttcatctcactcg |
439 |
Q |
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| T |
16371564 |
tataaacaataattaaaaaataatagcaaataa-ggatatttgatagacattttataacttccttttcatatcactcg |
16371640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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