View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_53 (Length: 432)
Name: NF1773_low_53
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_53 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 240 - 432
Target Start/End: Complemental strand, 34934773 - 34934567
Alignment:
| Q |
240 |
aaaagaaataaataagtataccaatgatataatctaataaagaaaacaatacaaacaacgataagaaattcaacctcaagtttgtaaagtctagttcaac |
339 |
Q |
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| T |
34934773 |
aaaagagaaaaataagtataccaatgatataatctaataaagaaaacaatacaaaccacgagaagaaattcaacctcaagtttgtaaagtctagttcaac |
34934674 |
T |
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| Q |
340 |
ttacaatattgattggtaggttgaagactttgtagttgtgtgt--------------ttatatgaaattcacacacaactacatatgatgtttgtcattt |
425 |
Q |
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| T |
34934673 |
ttacaatattgattggtaggttgaagactttgtagttgtgtgtgtgaatttcagatatcatatgaaattcacacacaactacatatgatgtttgtcattt |
34934574 |
T |
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| Q |
426 |
tatttat |
432 |
Q |
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||||||| |
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| T |
34934573 |
tatttat |
34934567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 34934997 - 34934831
Alignment:
| Q |
16 |
acgtgtgttaatagcacttgaggaccaaaacccagtgggttttcaaactgacgatgaaacataagactgtcgacgaagaaaactcgtcgcaccgccacca |
115 |
Q |
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| T |
34934997 |
acgtgtgttgatagcacttgaggaccaaaaccccgtgggttttcaaactgacgatgaaacataagattgtcgacgaagaaaactcatcgcaccaccacca |
34934898 |
T |
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| Q |
116 |
agaaccactacatgaggacgatgagagatttggagaagaagggaaggggtgcgacaacagttaggtt |
182 |
Q |
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| T |
34934897 |
ggaaccactacatgaggacgatgagagatttggagaagaagggaaggggtgcggcaacagttaggtt |
34934831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 40213502 - 40213426
Alignment:
| Q |
92 |
agaaaactcgtcgcaccgccaccaagaaccactacatgaggacgatgagagatttggagaagaagggaaggggtgcg |
168 |
Q |
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| T |
40213502 |
agaaaactcgttgcaccaccaccaagaaccactacatcaagacgacgagaggtttggagaagaagggaaggagtgcg |
40213426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 3551996 - 3551924
Alignment:
| Q |
92 |
agaaaactcgtcgcaccgccaccaagaaccactacatgaggacgatgagagatttggagaagaagggaagggg |
164 |
Q |
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| T |
3551996 |
agaaaactcatcgcaccaccaccagaaaccactgcatgaggacgatgagaggtttgaagaagaatggaagggg |
3551924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 19586379 - 19586428
Alignment:
| Q |
117 |
gaaccactacatgaggacgatgagagatttggagaagaagggaaggggtg |
166 |
Q |
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| T |
19586379 |
gaaccactacatgagaacaaagataggtttggagaagaagggaaggggtg |
19586428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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