View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_59 (Length: 414)
Name: NF1773_low_59
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_59 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 6458895 - 6458698
Alignment:
| Q |
201 |
tgtgtttaattttgtagcaaatggaaagggtctagttggaaaagaaacatttttgagcaaacatctaccacagttaccaactttgggagcaagacaagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6458895 |
tgtgtttaattttgtagcaaatggaaagggtctagttggaaaagaaacatttttgagcaaacatctaccacagttaccaactttgggagcaagacaagat |
6458796 |
T |
|
| Q |
301 |
gcattcagtgttttctttgaatatgatgctaattttggaatccctggagcattttacataagaaattatacacaagctgaattcttccttgttagtgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6458795 |
gcattcagtgttttctttgaatatgatgctaattttggaatacctggagcattttacataagaaattatacacaagctgaattcttccttgttagtgt |
6458698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 205 - 395
Target Start/End: Complemental strand, 6452713 - 6452523
Alignment:
| Q |
205 |
tttaattttgtagcaaatggaaagggtctagttggaaaagaaacatttttgagcaaacatctaccacagttaccaactttgggagcaagacaagatgcat |
304 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
6452713 |
tttaattttgtagcaagtggaaagggactagttggaaaggaaacatttttgagcaaacatcttcctcaattaccaactttgggagcaagacaagatgcat |
6452614 |
T |
|
| Q |
305 |
tcagtgttttctttgaatatgatgctaattttggaatccctggagcattttacataagaaattatacacaagctgaattcttccttgttag |
395 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6452613 |
tcagtattttctttgaatatgatgctaactttggaatcccaggagcattttacataagaaattatacacaagctgagttcttccttgttag |
6452523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 6459043 - 6458914
Alignment:
| Q |
10 |
attattctgtccattaatttcctagtcaagaataaaattttcactaattgaacataaacaagtggcagagatgtgatgtacttagatattttttggtctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6459043 |
attattctgtccattaatttcctagtcaagaataaaattttcactaattgaacataaacaagtggcagagatgtgatgtacttagatattttttggtctt |
6458944 |
T |
|
| Q |
110 |
gaaatatctgaatttgacattatatactat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6458943 |
gaaatatctgaatttgacattatatactat |
6458914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 36743501 - 36743619
Alignment:
| Q |
274 |
ttaccaactttgggagcaagacaagatgcattcagtgttttctttgaatatgatgctaattttggaatccctggagcattttacataagaaattatacac |
373 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||| ||| | |||||||||| || || ||||||||||| | ||||||||||| |
|
|
| T |
36743501 |
ttaccaaccttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacattaaaaattatacac |
36743600 |
T |
|
| Q |
374 |
aagctgaattcttccttgt |
392 |
Q |
| |
|
||| ||| |||| |||||| |
|
|
| T |
36743601 |
aaggtgagttctaccttgt |
36743619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 9602731 - 9602824
Alignment:
| Q |
275 |
taccaactttgggagcaagacaagatgcattcagtgttttctttgaatatgatgctaattttggaatccctggagcattttacataagaaatta |
368 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||||| | |||||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
9602731 |
taccaaccttgggagcaagacaagatgcatttagtattcactttgattgggatgctgattttggaatcccaggagcattttacataaggaatta |
9602824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University