View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_6 (Length: 782)
Name: NF1773_low_6
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 712; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 19 - 782
Target Start/End: Complemental strand, 51977535 - 51976772
Alignment:
| Q |
19 |
ccaccctaaacatgacagcacggcacataaacatcatatagttttggctatatagcacctcgagaaccagaaccagaagtctctccagaaagcataaccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51977535 |
ccaccctaaacatgacagcacggcacataaacatcatatagttttggctatatagcacctcgagaaccagaaccagaagtctctccagaaagcataaccc |
51977436 |
T |
|
| Q |
119 |
caccagtgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaat |
218 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977435 |
caccagtgtttgctcctttcggaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaat |
51977336 |
T |
|
| Q |
219 |
agtactaacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977335 |
agtactaacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccata |
51977236 |
T |
|
| Q |
319 |
gtaaaaaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctccat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977235 |
gtaaaaaattcttgaacttcccattcttcaacacgataccccctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctccat |
51977136 |
T |
|
| Q |
419 |
tgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctc |
518 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977135 |
tgttgtttctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctc |
51977036 |
T |
|
| Q |
519 |
cgccattctctccgctaagtttctcaacagcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaatc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51977035 |
tgccattctctccgctaagtttctcaacatcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatccctttaata |
51976936 |
T |
|
| Q |
619 |
gcttgcttactattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaa |
718 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51976935 |
gcttgctcacgattctcaataaagaatcttggagaaatttcgttgtccatcaggctttgaagcagtggaatatcatttgcttcagaagatgatattgcaa |
51976836 |
T |
|
| Q |
719 |
ttagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaacggcaatgtc |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51976835 |
ttagggaagtgttattgttgttcgtaagacaagtgagacaaatcattgattcaacggcaatgtc |
51976772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 42 - 771
Target Start/End: Complemental strand, 51973091 - 51972359
Alignment:
| Q |
42 |
cacataaacatcatatagttttggctatatagcacctcgagaaccagaaccagaagtctctccagaaagcataaccccaccagtgtttgctcttttcgaa |
141 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||| | ||| | || || ||||| |||||||||||| || ||||| || || |||||||||||||||| | |
|
|
| T |
51973091 |
cacataaacatcatataatcttggttatctagtagctccaaaatcaaaaccataagtctctccaggaatcataatcctgccggtgtttgctcttttcgga |
51972992 |
T |
|
| Q |
142 |
acaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaa |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
51972991 |
acaaactttctcacccacacatgtttcccattgatggaaaatttgactttagaagcccctctcagaatcatgtcaatagtactcaccttatgaaaaacaa |
51972892 |
T |
|
| Q |
242 |
ttctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttccca |
341 |
Q |
| |
|
||||||| ||||||| ||| ||||||| | |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
51972891 |
ttctagcgaaaagtggttgctcatttgcttgagtttcttgcataaacaaagtctcaatacaatctccataagccatgctaaaaaattctttaacttccca |
51972792 |
T |
|
| Q |
342 |
ttcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgatt---cctccttctccattgttgttgctcagttgttgc |
438 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||| |||| | ||||||||||||||||| |||||||| |
|
|
| T |
51972791 |
ttcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctatcatctgccggtataattccccctcttcctccattgttgttgctctgttgttgc |
51972692 |
T |
|
| Q |
439 |
acaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctccgccattctctccgctaagt |
538 |
Q |
| |
|
|| |||||||| || ||||||| |||||| || ||||||| || ||||||| | |||||| || ||||| || ||| |||| ||||||| ||||||| || |
|
|
| T |
51972691 |
accattgcaccagcgatcccaaccgaaccaaattgcagattcattggtccagtcgaaccaaacaaaaaactgttgttctccaccattctatccgctatgt |
51972592 |
T |
|
| Q |
539 |
ttctcaacagcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaatcgcttgcttactattctcaat |
638 |
Q |
| |
|
|||||| || | ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||| ||| |||| | || ||||| || |
|
|
| T |
51972591 |
ttctcatcatcgcctgttgcatgatgtcacccaatgcactcatacaatcttctcttcttgttttctccacccctcgaattgcttccacacgattctgaag |
51972492 |
T |
|
| Q |
639 |
aaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattagggaagtgttattgttg |
738 |
Q |
| |
|
||||||| | | || ||||| || ||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||| |||| ||| |||||| |
|
|
| T |
51972491 |
aaagaatttcagcgagatttccttttccattaggctttgaagaagtggaatatcatttgcttcataagatgacattgcaattacagaagcgttgttgttg |
51972392 |
T |
|
| Q |
739 |
ttcgtaagacaagtgagaaaaatcattgattca |
771 |
Q |
| |
|
|| ||||||||| ||||| | |||||||||||| |
|
|
| T |
51972391 |
ttggtaagacaactgagacatatcattgattca |
51972359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 127 - 771
Target Start/End: Original strand, 17711214 - 17711861
Alignment:
| Q |
127 |
tttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtactaa |
226 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |
|
|
| T |
17711214 |
tttgttcttttcggaacaaactttctgacccacacatgtttcctattgattgaaaatttgactttagaagcccctctcagaatcatgtcaatagtactta |
17711313 |
T |
|
| Q |
227 |
cattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagtaaaaaa |
326 |
Q |
| |
|
| ||| |||||||||||| || ||||| | ||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
17711314 |
ccatatgaaaaacaattctggcgaaaagcggttgctcatttggttgagtttcttgcataaacaaagcctcaatacaatctccataagccatggtaaaata |
17711413 |
T |
|
| Q |
327 |
ttcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctc--cttc-tccattgttg |
423 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||| || |||| |||||||||| |
|
|
| T |
17711414 |
ttctctaacttcccactcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctctcatccgctggtatgattcttcctcttcttccattgttg |
17711513 |
T |
|
| Q |
424 |
ttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctccgcca |
523 |
Q |
| |
|
|||||| |||||||||| ||| || | |||||||||| |||||| |||||||||| || ||||||| |||||| || ||||||| ||| |||| ||| |
|
|
| T |
17711514 |
ttgctctgttgttgcaccatttcagctgcaatcccaaccgaaccaaactgcagattcattggtccagccgaaccaaacaaaaaattattgttctccacca |
17711613 |
T |
|
| Q |
524 |
ttctctccgctaagtttctcaacagcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaatcgcttg |
623 |
Q |
| |
|
||||||| ||||||||||||| || | | ||||||||||| |||||||||| |||||||| |||||||||||||| |||||| ||||| ||| |||| |
|
|
| T |
17711614 |
ttctctctgctaagtttctcatcatcgcttgttgcatgatatcaccaaatgccctcatacatacttctcttcttgttttctccaccccttgaattgcttc |
17711713 |
T |
|
| Q |
624 |
cttactattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattagg |
723 |
Q |
| |
|
| || ||| | || ||||||| | |||| ||||| || || ||||| |||||||| |||||||||||||||||||||||| |||| |||| || || |
|
|
| T |
17711714 |
cacacgattatgaagaaagaatttcagagagatttcattttctattagactttgaagaagtggaatatcatttgcttcagaagatgacattgaaaataca |
17711813 |
T |
|
| Q |
724 |
gaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattca |
771 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
17711814 |
gaagtgttatagttgttggtaagacatgtgagacatgtcattgattca |
17711861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 89 - 756
Target Start/End: Original strand, 17726057 - 17726730
Alignment:
| Q |
89 |
aaccagaagtctctccagaaagcataaccccaccagtgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgac |
188 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
17726057 |
aaccagaagtctctccaggaagtataactttgtcggtgtttgttcttttcggaacaaactttctgacccacacatgtttcctattgattgaaaatttgac |
17726156 |
T |
|
| Q |
189 |
tttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaac |
288 |
Q |
| |
|
||| ||||| ||| |||||||||||||||||||||| || |||| ||||| |||||| | ||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
17726157 |
tttagaagctcctttcagaatcatatcaatagtactcaccttatgaaaaataattcttccgaaaagtggttgctcatttggttgagtttcttgcataaac |
17726256 |
T |
|
| Q |
289 |
aaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctat |
388 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||| | |
|
|
| T |
17726257 |
aaagtctcaatacaatctccataagccatagtaaaaaattctctaacttcccactcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctct |
17726356 |
T |
|
| Q |
389 |
catccgccggtatgattcctcc---ttctccattgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactgg |
485 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||||||| |||||||| | | |||||| |||||||||| |||||| |||||||||| | ||| |
|
|
| T |
17726357 |
catccgctggtatgattcctcctcttcctccattgttgttgctatgttgttgccctagtgcacctgcaatcccaaccgaaccaaactgcagatttattgg |
17726456 |
T |
|
| Q |
486 |
tccaattgaaccataccaaaaattgctgtgctccgccattctctccgctaagtttctcaacagcacctgttgcatgatgtcaccaaatgaactcatacaa |
585 |
Q |
| |
|
|||| | |||||| || ||||||| ||| |||| |||||||||| |||| |||||||| || | || |||||||||| |||||||||| |||||||| |
|
|
| T |
17726457 |
tccagtcgaaccaaacaaaaaattattgttctccaccattctctctgctatgtttctcatcatcgcccgttgcatgatatcaccaaatgccctcatacat |
17726556 |
T |
|
| Q |
586 |
tcttctcttcttgttatctccatcccttcaatcgcttgcttactattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtg |
685 |
Q |
| |
|
||||| |||||||| |||||| ||| | ||| |||| | | | ||||| | ||||||| | |||| ||||| || ||||||| ||| ||||| |||| |
|
|
| T |
17726557 |
acttcttttcttgttttctccaccccatgaattgcttccatgcaattctgacgaaagaatttcagagagatttcattttccattacgctctgaagaagtg |
17726656 |
T |
|
| Q |
686 |
gaatatcatttgcttcagaaaatga---tattgcaattagggaagtgttattgttgttcgtaagacaagtgaga |
756 |
Q |
| |
|
|||||||||||||||||||| || | ||||| | ||||||| |||||| ||||||| |||||||| |||||| |
|
|
| T |
17726657 |
gaatatcatttgcttcagaagataacattattgtagttagggaggtgttactgttgttggtaagacatgtgaga |
17726730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 125 - 773
Target Start/End: Original strand, 40783600 - 40784254
Alignment:
| Q |
125 |
tgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtact |
224 |
Q |
| |
|
||||| ||||||| | ||||||||| || ||||| | |||||| |||||||| |||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
40783600 |
tgtttactctttttggaacaaacttacgggcccatatatgttttccattgataaaaaatttggctttagaatgccctctcagaatcatatcaatagtatc |
40783699 |
T |
|
| Q |
225 |
aacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagt-aaa |
323 |
Q |
| |
|
|| |||| |||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||||||| ||||| |||||||||||| ||||||| ||| |
|
|
| T |
40783700 |
caccttatgtaaaacaattctagcgaaaagtgcttgttcatttggtgcagttttttgcataaacaaagcttcaatacaatctccataaaccatagtgaaa |
40783799 |
T |
|
| Q |
324 |
aaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctc------ca |
417 |
Q |
| |
|
|| ||||| ||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||| || |||||||||||| ||||| ||| || |
|
|
| T |
40783800 |
aagttctt-aacttcccattcttcaacatgacaccctttcgaaaatgtcacaaacaatgtcctatcttctgccggtatgatttctcctcctcttccttca |
40783898 |
T |
|
| Q |
418 |
ttgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgct |
517 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||| || | |||||||||||||| | | ||||||||||||||| ||||||||||| ||| | |
|
|
| T |
40783899 |
ttgttgttgttttgttgttgcacaattgcaccatcaatcctaactggaccgaactgcagattcgccggtccaattgaaccaaaccaaaaattgttgttat |
40783998 |
T |
|
| Q |
518 |
ccgccattctctccgctaagtttctcaacagcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaat |
617 |
Q |
| |
|
| |||||| | | | |||||||| | | |||||||||||||||||| |||| ||||||||| ||||| || ||| |||| | |||| ||| |
|
|
| T |
40783999 |
tcatcattctatgtgtcatgtttctcattatcgcctgttgcatgatgtcactcaatgctctcatacaaacttctttttctgtcttctcaacccctcgaat |
40784098 |
T |
|
| Q |
618 |
cgcttgcttactattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgca |
717 |
Q |
| |
|
|||| | || |||||||| ||||||| || |||| ||||| |||||||| ||||||||||| ||||||||||||||| ||||| || ||||| || | |
|
|
| T |
40784099 |
tgcttccacacgattctcaagaaagaattttagagagatttctttgtccatcaggctttgaagaagtggaatatcattttcttcataatatgatttttcg |
40784198 |
T |
|
| Q |
718 |
attagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaac |
773 |
Q |
| |
|
||| ||||||||||||||||||| |||| |||| ||||| | |||||||||||||| |
|
|
| T |
40784199 |
atttgggaagtgttattgttgttggtaatacaactgagacacatcattgattcaac |
40784254 |
T |
|
Back To:
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