View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_63 (Length: 407)
Name: NF1773_low_63
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 34429794 - 34429595
Alignment:
| Q |
15 |
aatcaaaaccatgaatcaatttcaacaacttcaccaaattctcatcagaagcatcatctcttgctgctaacacagcctcctccaacactttgcattcatt |
114 |
Q |
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| T |
34429794 |
aatcaaaaccatgaatcaatttcaacaacttcaccaaattctcatcagaagcatcatctcttgctgctaacacagcctcctccaacacttcgcattcatt |
34429695 |
T |
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| Q |
115 |
ttcccaaccattcttcttttcctgttgctttgcattctcaacacccataccatcctcctcatcatcatcatcgtcgccttctttgtattccgattttata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34429694 |
ttcccaaccattcttcttttcctgttgctttgcattctcaacacccataccatccccctcatcatcatcatcgt---cttctttgtattccgattttata |
34429598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 283 - 407
Target Start/End: Complemental strand, 34429529 - 34429405
Alignment:
| Q |
283 |
aaattttccatttttcttccatcctttattcaaaaactttttcctcttaccattgagattcaatttcacaaaatttccttctccagcgccttttagtgcc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429529 |
aaattttccatttttcttccatcctttattcaaaaactttttcctcttaccattgagattcaatttcacaaaatttccttctccagcgccttttagtgcc |
34429430 |
T |
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| Q |
383 |
ttcactatcggcgttaccacactag |
407 |
Q |
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| T |
34429429 |
ttcactatcggcgttaccacactag |
34429405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 33738156 - 33738232
Alignment:
| Q |
283 |
aaattttccatttttcttccatcctttattcaaaaactttttcctcttaccattgagattcaatttcacaaaatttc |
359 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||| | || |||||||||| |||||| ||||| |||| |
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| T |
33738156 |
aaatttttcattttccttccatcctttattcaaaaacttttttatattcccattgagatccaatttaacaaattttc |
33738232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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